iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
PINA	HINT	Mentha
Protein Expression/Proteomics

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 adaptor/Cullin RING/SCF/F-box	F-box	23720308

Reviewed

Classification

Family	Identity	E-value	Score	Source Orthology
E3 adaptor/Cullin RING/APC_C/APC_C	30.77	6.90e-02	33.10	IUUC-Sce-106433

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MELIPNLPDD VARECLLRSS YQQFPVIASV CRAWNREVSL SQFLHQRKAS RHSQELLILS 60
QARVDPAGSG KIIATPEYRI SVLESGSGLW TELPPIPGQT KGLPLFCRLV SVGSDLIVLG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CAAATTCCGT TATCTTCATT TTATTTGATT TAAACTATAA AATATACAAC ACAAAAATTA 60
TATTAAAAAA AGAAAGAAAC GATGAATGAA TCAACAAGTT TTCTAGAAAC ACTTATCTTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0880--Kelch repeat
KW-1185--Reference proteome
KW-0677--Repeat

Interpro

IPR001810--F-box_dom
IPR015915--Kelch-typ_b-propeller
IPR006652--Kelch_1

Pfam

PF01344--Kelch_1

SMART

SM00612--Kelch

Gene Ontology

GO:0005829--C:cytosol
GO:0019005--C:SCF ubiquitin ligase complex
GO:0031625--F:ubiquitin protein ligase binding
GO:0080037--P:negative regulation of cytokinin-activated signaling pathway
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:2000762--P:regulation of phenylpropanoid metabolic process
GO:0030162--P:regulation of proteolysis

KEGG

ath:AT1G80440

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006080	Arabidopsis lyrata	89.11	0.00e+00	644.00
IUUC-Bdi-014921	Brachypodium distachyon	38.44	4.00e-65	241.00
IUUC-Bol-015429	Brassica oleracea	78.89	2.00e-160	557.00
IUUC-Bra-017279	Brassica rapa	81.39	1.00e-173	601.00
IUUC-Gmo-039392	Gadus morhua	27.96	1.00e-10	61.20
IUUC-Gma-042989	Glycine max	52.08	1.00e-105	375.00
IUUC-Hvu-047097	Hordeum vulgare	37.47	7.00e-55	207.00
IUUC-Lpe-050853	Leersia perrieri	39.68	1.00e-56	213.00
IUUC-Mor-057181	Magnaporthe oryzae	26.57	3.00e-08	52.00
IUUC-Mpo-057430	Magnaporthe poae	30.88	7.60e-02	31.60
IUUC-Obr-076711	Oryza brachyantha	45.24	2.00e-46	177.00
IUUC-Ogu-078360	Oryza glumaepatula	40.41	4.00e-49	187.00
IUUC-Opu-083272	Oryza punctata	38.14	2.00e-57	215.00
IUUC-Pma-094586	Petromyzon marinus	24.68	3.00e-08	51.60
IUUC-Pop-099836	Populus trichocarpa	49.72	1.00e-101	362.00
IUUC-Sce-106433	Saccharomyces cerevisiae	30.77	2.00e-02	32.70
IUUC-Ssl-108584	Sclerotinia sclerotiorum	30.99	1.10e+00	28.50
IUUC-Sit-110557	Setaria italica	35.70	6.00e-40	157.00
IUUC-Sly-110913	Solanum lycopersicum	48.62	3.00e-94	337.00
IUUC-Stu-112061	Solanum tuberosum	48.34	2.00e-94	338.00
IUUC-Sbi-114056	Sorghum bicolor	38.87	6.00e-52	197.00
IUUC-Tru-117743	Takifugu rubripes	26.56	1.00e-11	64.30
IUUC-Tae-125904	Triticum aestivum	37.43	1.00e-52	199.00
IUUC-Uma-129391	Ustilago maydis	20.11	2.70e-02	32.70
IUUC-Vvi-130895	Vitis vinifera	50.55	8.00e-99	352.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence