iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-006715

UUCD1 version

UUC-ArT-01293

Ensembl Protein ID

AT1G01670.2

UniProt Accession

Q8GXQ7; Q9LQ93; PUB56_ARATH

Genbank Protein ID

AAF78397.1; AEE27320.1; ANM59608.1; BAC42729.1

Protein Name

U-box domain-containing protein 56; Plant U-box protein 56; RING-type E3 ubiquitin transferase PUB56

Genbank Nucleotide ID

AC009273; CP002684; CP002684; AK118101

Gene Name

PUB56; At1g01670; T1N6.28

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT1G01670	AT1G01670.2	AT1G01670.2

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/U-box	U-box	18393940

Classification

Family	E-value	Score	Start	End
E3 activity/RING/U-box	1.20e-24	87.0	294	364

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceen 72
           +p+ f+CpIs+++M++P+v+++G+ty++   ++wl++gg+++P+t+ +l++++l+Pnl+lr+ i++w++++
   Q: 294  PPQCFICPISKDIMQNPHVAADGYTYEADEFRRWLNHGGEKSPMTNLRLENRNLIPNLVLRSAIKDWLQQH 364
           79*******************************************************************98 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Functions as an E3 ubiquitin ligase.

Protein Sequence
(Fasta)

MTPSSSGLEQ SEIDAIQELE QTSRNDTLLK YHDICIDEGV IEQDVDMSCF SANSVGEWIV 60
ELIYQNNIKK LIMGATADSH YSEGMVHITP TKADYVIQHA PHCCNIWLVC NGNLIQTREG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTTTAAAAAA AAAATCTAAA ATGATCGTAG GAAATGTGTC TTTTACGGTA AGAATTAAGA 60
AATGTTCTGC GATTAGCTTA AGTTGCATTT AATTTATTTG TGAGAATTGG CTCGTTCTGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase
KW-0833--Ubl conjugation pathway

Interpro

IPR014729--Rossmann-like_a/b/a_fold
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

KEGG

ath:AT1G01670

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Bol-015918	Brassica oleracea	68.87	3.00e-111	394.00
IUUC-Bra-017557	Brassica rapa	69.76	1.00e-111	396.00
IUUC-Fso-038171	Fusarium solani	26.92	2.00e-02	32.30
IUUC-Sre-115072	Sporisorium reilianum	47.37	1.50e-01	32.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence