iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
fgenesh2_kg.4__1334__AT2G33340.1	fgenesh2_kg.4__1334__AT2G33340.1	fgenesh2_kg.4__1334__AT2G33340.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.20e-21	76.5	262	292
E3 activity/RING/U-box	4.30e-16	59.4	2	68
UBD/Beta-Prp	5.10e-41	141.5	219	434

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWD 29
           gH+ +vt+++f  d +l++++s D+t+++W+
   Q: 262  GHSKKVTSVKFvGDtDLVLTASADKTVRIWR 292
           8***********666***************8 PP

E3 activity/RING/U-box

   S: 7    lCpIslelMrdPvvlp.sGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceens 73
           +C+Is+e++++Pvv+  sG  ++r+ Ie++++++gk cPvt++plt +d+vP +t   +  + +++ s
   Q: 2    NCAISGEVPKEPVVSTkSGLLFERRLIERHISDYGK-CPVTGEPLTIDDIVPIKTGEIIKPKTLHTAS 68
           7*************999*******************.******************9999998888766 PP

UBD/Beta-Prp

   S: 49   sgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdle. 124
           + +++++ ++++ +++++++tg+ D+t+ ++d  +g++++tl+gh+++v+s++f  ++d ++++s+d+t+r+w  + 
   Q: 219  KTNKPGICSMDILHSKDVIATGGVDATAVLFDRPSGQILSTLTGHSKKVTSVKFVGDTDLVLTASADKTVRIWRNPg 295
           44455555555555555555555555555555555555555555555555555555555555555555555555431 PP
   S: 125  ..tgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtl.tgghtdsvyslsfdsngkelvsg 198
             ++ c + tl+ h++ v+ v+vhp+++++vs+slD+t  ++dl++g++l +   g  + + +  +f+++g  l +g
   Q: 296  dgNYACGH-TLNDHSAEVRAVTVHPTNKYFVSASLDSTWCFYDLSSGSCLAQVsDGSENADYTAAAFHPDGLILGTG 371
           11334444.55555555555555555555555555555555555555555555322233344444455555555555 PP
   S: 199  sldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlql 262
              + vk+wd++++  v ++ ght  v+ + fs+n+ +l+++++D  +r+Wdlr+  + k++  
   Q: 372  TSQSVVKIWDVKSQANVAKFDGHTGEVTAISFSENGYFLATAAED-GVRLWDLRKLRNFKSFLS 434
           555555555555555555555555555555555555555555433.355555555444444332 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MNCAISGEVP KEPVVSTKSG LLFERRLIER HISDYGKCPV TGEPLTIDDI VPIKTGEIIK 60
PKTLHTASIP GLLGTFQNEW DGLMLSNFAL EQQLHTARQE LSHALYQHDS ACRVIARLKK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTCCCGGCTT CCGCGATTTT GCTTTGAGGC GCCGGACCGG AGAAGATAAA ACCCTAGCTC 60
AGCCTCACTC ACAGGGAGTT CTACGTCCAC CTGAGTTCTT GTGCTTCGTC GTATTACTCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR013915--Pre-mRNA_splic_Prp19
IPR003613--Ubox_domain
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08606--Prp19
PF00400--WD40

SMART

SM00504--Ubox
SM00320--WD40

Gene Ontology

GO:0005618--C:cell wall
GO:0009507--C:chloroplast
GO:0004842--F:ubiquitin-protein transferase activity
GO:0042742--P:defense response to bacterium

KEGG

aly:ARALYDRAFT_482274

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ath-007696	Arabidopsis thaliana	97.74	0.00e+00	963.00
IUUC-Ago-007879	Ashbya gossypii	26.82	3.00e-34	139.00
IUUC-Acl-008335	Aspergillus clavatus	32.72	5.00e-59	221.00
IUUC-Afl-008527	Aspergillus flavus	35.54	4.00e-67	248.00
IUUC-Ani-009280	Aspergillus nidulans	34.38	4.00e-62	231.00
IUUC-Ang-009746	Aspergillus niger	34.18	6.00e-66	244.00
IUUC-Aor-009905	Aspergillus oryzae	35.32	3.00e-69	254.00
IUUC-Ate-010412	Aspergillus terreus	33.83	2.00e-59	222.00
IUUC-Bol-016207	Brassica oleracea	94.46	0.00e+00	939.00
IUUC-Bra-017650	Brassica rapa	93.02	0.00e+00	945.00
IUUC-Cgl-026507	Colletotrichum gloeosporioides	35.60	2.00e-60	226.00
IUUC-Dse-031220	Dothistroma septosporum	34.95	2.00e-64	239.00
IUUC-Kpa-049195	Komagataella pastoris	43.07	3.00e-20	92.40
IUUC-Lma-053143	Leptosphaeria maculans	34.39	6.00e-65	242.00
IUUC-Olu-087757	Ostreococcus lucimarinus	46.92	2.00e-117	414.00
IUUC-Pno-095115	Phaeosphaeria nodorum	34.44	2.00e-66	245.00
IUUC-Pte-104385	Pyrenophora teres	31.00	2.00e-61	229.00
IUUC-Pyt-104697	Pyrenophora triticirepentis	31.14	8.00e-61	227.00
IUUC-Sce-106147	Saccharomyces cerevisiae	24.44	1.00e-25	110.00
IUUC-Spo-108315	Schizosaccharomyces pombe	29.62	2.00e-41	162.00
IUUC-Tme-127026	Tuber melanosporum	32.74	5.00e-69	254.00
IUUC-Uma-129626	Ustilago maydis	35.50	3.00e-79	288.00
IUUC-Yli-134607	Yarrowia lipolytica	52.27	1.00e-36	144.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence