iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0007s13400	POPTR_0007s13400.3	POPTR_0007s13400.3
POPTR_0007s13400	POPTR_0007s13400.2	POPTR_0007s13400.2
POPTR_0007s13400	POPTR_0007s13400.1	POPTR_0007s13400.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	8.00e-28	96.4	260	297
UBD/Beta-Prp	1.40e-44	153.5	207	475

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf....sdtllvsGsdDgtikvWDlrtgvll 36
           Htdsv +la+      ++l+s+s D+++k+WD++ g++ 
   Q: 260  HTDSVLGLAWnkhfR-NILASASADKQVKIWDVDAGKCD 297
           **********86543.89*****************9995 PP

UBD/Beta-Prp

   S: 21   dksllatgsrdgtikvwdvttgkl.......................lrslsgheaevtavkfspdgk.ilvtgseDrtikvwdlstgkcv 87
           +++++a+gs+   i++wd++  +                          +  +h++ v  + ++++   il+++s D+ +k+wd+++gkc 
   Q: 207  KGNFIAVGSMEPAIEIWDLDIIDEvqpavvlggieekkkkkgkkvsiKYKEGSHTDSVLGLAWNKHFRnILASASADKQVKIWDVDAGKCD 297
           6899****************998899****999999999999998855556889999******999877********************** PP
   S: 88   htlkghedsvlslsfspsg.dklvsGshdrtirv............wdletgqclee.................................. 131
           +t++ h+d+v +++++    ++l+sGs dr + +            w +  + ++ +                                  
   Q: 298  ITMEHHTDKVQAVAWNHHEpQVLLSGSFDRSVVMkdgrlpsdpgfkWSVTADVESLAwdphdkhlfvvsledgtvqgfdiraaksgsasdl 388
           *****************666**************999999999966555555555559999999999999999999999999999999999 PP
   S: 132  ....tlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdl..ktgkllrtltgghtdsvyslsfdsng.kelvsgsldgtvklwdlqt 211
               tl  hd++v++++++p + nll++Gs+D++v+lWdl  ++ ++l      + +++ s+sf+++  + l+ g+ +gt++lwd  +
   Q: 389  kpsfTLHAHDKAVCTISYNPLApNLLATGSTDKMVKLWDLsnNQPSCLVSKNP-KAGAIFSVSFSEDNpFLLAIGGSKGTLELWDTLS 475
           99999999999999999999999999999999999999996655667776665.8999999999887756777899999999999753 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MIAAVSWVPK GVAKSVPGVA DPPSKEEIEE LIKASDLERS GEDSGSEEDD QEMDVGAAKQ 60
TGEVSQALAV ANALGRSSKV NKSETKFDDI ADGLKELDMD NYDDEEDGIE LFSTGLGDLY 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTTTCTCTTG TCGTTGCCAT CCTGCTCTTT CCTCTCCGGC GGCTTTCTCT TGTCGTTGCC 60
ATCCTGCTCT TTCCTCTCCG GCGGCTTTCT CTTGTCGTTG CCATTCAGGT AAACATCCGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR023302--Pept_S9A_N
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002719	Amborella trichopoda	62.65	7.00e-134	469.00
IUUC-Aca-005184	Anolis carolinensis	38.07	1.00e-70	260.00
IUUC-Aly-005967	Arabidopsis lyrata	64.07	3.00e-173	601.00
IUUC-Ath-007642	Arabidopsis thaliana	60.20	8.00e-163	566.00
IUUC-Ago-007922	Ashbya gossypii	29.50	2.00e-44	173.00
IUUC-Acl-008064	Aspergillus clavatus	37.60	1.00e-84	306.00
IUUC-Afu-009081	Aspergillus fumigatus	40.55	3.00e-91	328.00
IUUC-Ani-009187	Aspergillus nidulans	40.12	4.00e-86	311.00
IUUC-Aor-010018	Aspergillus oryzae	44.20	7.00e-82	297.00
IUUC-Ate-010542	Aspergillus terreus	47.87	2.00e-65	242.00
IUUC-Ame-011810	Astyanax mexicanus	33.54	4.00e-61	228.00
IUUC-Bta-012671	Bos taurus	35.74	4.00e-67	248.00
IUUC-Bol-016451	Brassica oleracea	63.60	2.00e-169	588.00
IUUC-Bra-017210	Brassica rapa	63.35	6.00e-172	596.00
IUUC-Cja-018931	Callithrix jacchus	39.46	4.00e-64	238.00
IUUC-Cre-022807	Chlamydomonas reinhardtii	45.62	4.00e-103	367.00
IUUC-Csa-024120	Chlorocebus sabaeus	39.73	3.00e-65	242.00
IUUC-Cin-025441	Ciona intestinalis	34.35	1.00e-52	200.00
IUUC-Cgl-026678	Colletotrichum gloeosporioides	44.10	4.00e-81	295.00
IUUC-Cne-026879	Cryptococcus neoformans	31.47	1.00e-52	200.00
IUUC-Cme-027322	Cyanidioschyzon merolae	29.32	1.00e-27	117.00
IUUC-Dre-027584	Danio rerio	36.20	6.00e-68	250.00
IUUC-Dor-030767	Dipodomys ordii	39.84	4.00e-65	241.00
IUUC-Eeu-034899	Erinaceus europaeus	35.88	1.00e-67	250.00
IUUC-Fca-036260	Felis catus	39.73	2.00e-64	239.00
IUUC-Fso-038104	Fusarium solani	46.29	1.00e-82	300.00
IUUC-Gmo-038715	Gadus morhua	39.53	5.00e-65	241.00
IUUC-Gma-044254	Glycine max	67.15	1.00e-159	555.00
IUUC-Ggo-044778	Gorilla gorilla	35.90	5.00e-70	258.00
IUUC-Hsa-046975	Homo sapiens	39.73	6.00e-65	241.00
IUUC-Lpe-050918	Leersia perrieri	59.02	7.00e-145	506.00
IUUC-Loc-051947	Lepisosteus oculatus	36.42	7.00e-68	250.00
IUUC-Lma-053310	Leptosphaeria maculans	37.03	9.00e-80	290.00
IUUC-Meu-056892	Macropus eugenii	37.92	3.00e-48	185.00
IUUC-Mor-057110	Magnaporthe oryzae	42.71	3.00e-80	291.00
IUUC-Mtr-058677	Medicago truncatula	62.01	7.00e-169	586.00
IUUC-Mvi-060307	Microbotryum violaceum	35.75	1.00e-68	253.00
IUUC-Mmr-061729	Microcebus murinus	36.36	3.00e-67	248.00
IUUC-Mmu-063191	Mus musculus	36.73	5.00e-71	261.00
IUUC-Mlu-068240	Myotis lucifugus	39.73	8.00e-65	240.00
IUUC-Ncr-068630	Neurospora crassa	45.21	7.00e-78	284.00
IUUC-Nle-069444	Nomascus leucogenys	39.73	6.00e-65	241.00
IUUC-Oan-073312	Ornithorhynchus anatinus	39.21	1.00e-65	243.00
IUUC-Ocu-074548	Oryctolagus cuniculus	39.73	2.00e-65	243.00
IUUC-Oba-075486	Oryza barthii	56.15	4.00e-140	490.00
IUUC-Obr-076759	Oryza brachyantha	59.47	3.00e-148	517.00
IUUC-Ogl-076951	Oryza glaberrima	34.46	8.00e-36	145.00
IUUC-Ogu-078324	Oryza glumaepatula	52.57	5.00e-123	433.00
IUUC-Oin-079455	Oryza indica	59.34	3.00e-152	531.00
IUUC-Olo-080518	Oryza longistaminata	61.99	3.00e-130	457.00
IUUC-Ome-081585	Oryza meridionalis	54.51	9.00e-131	459.00
IUUC-Oni-082084	Oryza nivara	58.32	4.00e-145	507.00
IUUC-Opu-084114	Oryza punctata	58.35	1.00e-145	508.00
IUUC-Oru-084211	Oryza rufipogon	58.32	4.00e-145	507.00
IUUC-Osa-085974	Oryza sativa	59.34	3.00e-152	531.00
IUUC-Oga-088626	Otolemur garnettii	37.19	6.00e-68	251.00
IUUC-Ptr-091379	Pan troglodytes	39.73	6.00e-65	241.00
IUUC-Pma-094478	Petromyzon marinus	42.86	9.00e-56	209.00
IUUC-Pno-095033	Phaeosphaeria nodorum	40.15	3.00e-77	282.00
IUUC-Pca-100653	Procavia capensis	36.58	8.00e-53	200.00
IUUC-Ppe-101910	Prunus persica	74.13	0.00e+00	659.00
IUUC-Pva-103106	Pteropus vampyrus	39.18	6.00e-64	238.00
IUUC-Ptt-103725	Puccinia triticina	39.04	1.00e-30	127.00
IUUC-Pte-104400	Pyrenophora teres	41.77	4.00e-78	285.00
IUUC-Pyt-104707	Pyrenophora triticirepentis	38.35	4.00e-80	291.00
IUUC-Rno-105173	Rattus norvegicus	36.91	3.00e-66	245.00
IUUC-Sja-107920	Schizosaccharomyces japonicus	36.18	1.00e-62	233.00
IUUC-Sit-110604	Setaria italica	58.93	1.00e-149	522.00
IUUC-Sly-111400	Solanum lycopersicum	66.05	2.00e-159	555.00
IUUC-Stu-112520	Solanum tuberosum	51.59	2.00e-105	375.00
IUUC-Tgu-117052	Taeniopygia guttata	34.48	3.00e-56	211.00
IUUC-Tca-121431	Theobroma cacao	75.21	0.00e+00	690.00
IUUC-Tre-122165	Trichoderma reesei	43.24	4.00e-81	295.00
IUUC-Tvi-122282	Trichoderma virens	43.77	2.00e-81	296.00
IUUC-Tbe-128052	Tupaia belangeri	40.00	7.00e-57	214.00
IUUC-Uma-129566	Ustilago maydis	33.27	6.00e-62	231.00
IUUC-Vda-129705	Verticillium dahliae	45.17	1.00e-83	303.00
IUUC-Vpa-130511	Vicugna pacos	39.01	3.00e-55	209.00
IUUC-Vvi-131241	Vitis vinifera	74.59	3.00e-177	614.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence