iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099844

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Zinc finger family protein

Genbank Nucleotide ID

CM000341

Gene Name

POPTRDRAFT_813408; POPTR_0005s11000g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0005s11000	POPTR_0005s11000.1	POPTR_0005s11000.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	2.30e-07	32.4	190	232

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf...kdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           C++Cl+df   ++ +++lp C H+fh+ C+ kw        ++++CPlCr
   Q: 190  CSVCLQDFqlgET-VRSLPhCHHMFHLPCIDKW------LLRHASCPLCR 232
           ********88555.*******************......999*******8 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MEVYPYPSRF SMSSLCSFGN FVDKVKEVCN FVVSAIIGNI FSAIFTFFFA LVGTLLGAMT 60
GALIGQETES GFVRGAAVGA ISGAVFSIEV FESSLVLWQS DESGIGCVLY LIDVIASLLS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGAAGGAAGA TCTTTGTTTC GAAGAAAACA GGTGGAAAAT TGTGACCGAA GAAAAATATT 60
AGTCATAAGA AGCTTTAAAT GGTAGTTGGT TGATAAGGGT TTCATTTCTC TCCATCTTTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0005s11000g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000505	Aegilops tauschii	55.21	1.00e-60	225.00
IUUC-Atr-002941	Amborella trichopoda	47.37	1.00e-44	172.00
IUUC-Aly-006511	Arabidopsis lyrata	79.46	3.00e-93	333.00
IUUC-Ath-007348	Arabidopsis thaliana	77.68	3.00e-91	327.00
IUUC-Bdi-014992	Brachypodium distachyon	54.04	9.00e-63	232.00
IUUC-Bol-015818	Brassica oleracea	79.45	7.00e-104	369.00
IUUC-Bra-017036	Brassica rapa	79.45	9.00e-104	368.00
IUUC-Gma-043841	Glycine max	80.00	9.00e-100	355.00
IUUC-Hvu-047681	Hordeum vulgare	52.94	1.00e-52	199.00
IUUC-Lpe-051237	Leersia perrieri	53.03	9.00e-62	229.00
IUUC-Mtr-058160	Medicago truncatula	82.68	8.00e-99	352.00
IUUC-Mac-064778	Musa acuminata	63.50	2.00e-74	270.00
IUUC-Oba-075390	Oryza barthii	52.24	2.00e-61	228.00
IUUC-Obr-076264	Oryza brachyantha	52.74	6.00e-62	229.00
IUUC-Ogl-077598	Oryza glaberrima	52.24	2.00e-61	228.00
IUUC-Ogu-078526	Oryza glumaepatula	52.24	2.00e-61	228.00
IUUC-Oin-079706	Oryza indica	52.24	2.00e-61	228.00
IUUC-Olo-080832	Oryza longistaminata	52.24	2.00e-61	228.00
IUUC-Ome-081142	Oryza meridionalis	52.24	2.00e-61	228.00
IUUC-Oni-082117	Oryza nivara	52.24	2.00e-61	228.00
IUUC-Opu-083964	Oryza punctata	52.24	1.00e-61	228.00
IUUC-Oru-084552	Oryza rufipogon	52.24	2.00e-61	228.00
IUUC-Osa-085950	Oryza sativa	52.24	2.00e-61	228.00
IUUC-Ppe-101906	Prunus persica	89.36	5.00e-116	409.00
IUUC-Sce-106223	Saccharomyces cerevisiae	36.56	9.00e-11	59.30
IUUC-Smo-109575	Selaginella moellendorffii	40.59	5.00e-33	133.00
IUUC-Sit-110188	Setaria italica	60.91	7.00e-60	223.00
IUUC-Sbi-113894	Sorghum bicolor	54.55	7.00e-51	192.00
IUUC-Tca-121142	Theobroma cacao	88.09	4.00e-118	416.00
IUUC-Tae-122750	Triticum aestivum	59.52	6.00e-55	206.00
IUUC-Tur-126137	Triticum urartu	46.08	3.00e-44	171.00
IUUC-Vvi-131089	Vitis vinifera	83.40	4.00e-114	403.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence