iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099626

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000350

Gene Name

POPTRDRAFT_243370; POPTR_0014s18620g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0014s18620	POPTR_0014s18620.1	POPTR_0014s18620.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.00e-07	31.6	148	178

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 9    laf....sdtllvsGsdDgtikvWDlrtgvll 36
           ++f    +  +l+sGs D+ +++WD  t  ++
   Q: 148  VRFhplhP-EILASGSLDHEVRLWDANTSECI 178
           44554544.89**************8877775 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MTPVSLPLDR NPPLNPPLLS GRNALCLLVQ REICPRTKHT PKRRWGEASQ WNYNSSSVPK 60
TEPARDAKRG LISWAEAESL RHLSAQYCPL VPPPRSTIAA AFSPDGKTLA STQQVLLLCG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TAACACCTCT CTCTCTCTCT CTCTCTGAGG CCATAGGCGC ACACATTTTA TTATTCACCT 60
TCCTGCTCTC TCCTCTTACT AGGTTATGTC CAAAAATAAA ATCCAACACC CATAACATTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011047--Quinoprotein_ADH-like_supfam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0043231--C:intracellular membrane-bounded organelle
GO:0006914--P:autophagy

KEGG

pop:POPTR_0014s18620g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002557	Amborella trichopoda	53.33	9.00e-127	447.00
IUUC-Aly-005774	Arabidopsis lyrata	63.12	0.00e+00	920.00
IUUC-Ath-007656	Arabidopsis thaliana	62.74	0.00e+00	885.00
IUUC-Bdi-014580	Brachypodium distachyon	51.46	0.00e+00	719.00
IUUC-Bol-016094	Brassica oleracea	61.15	0.00e+00	868.00
IUUC-Bra-017308	Brassica rapa	61.54	0.00e+00	870.00
IUUC-Gma-044022	Glycine max	69.21	0.00e+00	1036.00
IUUC-Hvu-047536	Hordeum vulgare	54.88	0.00e+00	750.00
IUUC-Lpe-051045	Leersia perrieri	51.05	0.00e+00	703.00
IUUC-Mtr-058484	Medicago truncatula	65.78	0.00e+00	978.00
IUUC-Oba-075024	Oryza barthii	49.48	7.00e-114	404.00
IUUC-Obr-076172	Oryza brachyantha	50.00	4.00e-117	415.00
IUUC-Ogl-077315	Oryza glaberrima	50.31	0.00e+00	666.00
IUUC-Ogu-078025	Oryza glumaepatula	49.38	4.00e-114	405.00
IUUC-Oni-082463	Oryza nivara	49.38	6.00e-114	404.00
IUUC-Opu-084041	Oryza punctata	51.30	1.00e-113	403.00
IUUC-Oru-085075	Oryza rufipogon	49.18	2.00e-114	406.00
IUUC-Osa-085397	Oryza sativa	50.19	0.00e+00	664.00
IUUC-Ppe-101783	Prunus persica	69.55	0.00e+00	1025.00
IUUC-Sit-110786	Setaria italica	51.28	0.00e+00	712.00
IUUC-Sly-110859	Solanum lycopersicum	58.42	0.00e+00	833.00
IUUC-Stu-112031	Solanum tuberosum	58.29	0.00e+00	833.00
IUUC-Tca-121568	Theobroma cacao	69.20	0.00e+00	1029.00
IUUC-Tur-126480	Triticum urartu	55.30	0.00e+00	709.00
IUUC-Vvi-131437	Vitis vinifera	69.70	0.00e+00	1068.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence