iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099999

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

WD-40 repeat family protein

Genbank Nucleotide ID

CM000338

Gene Name

POPTRDRAFT_830572; POPTR_0002s24320g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0002s24320	POPTR_0002s24320.1	POPTR_0002s24320.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.50e-27	95.6	500	529
UBD/Beta-Prp	7.90e-43	147.8	498	622

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 3    tdsvtclaf.sd.tllvsGsdDgtikvWDl 30
           +++vtc++f sd +ll+s+++D+++ +W++
   Q: 500  NSKVTCCHFsSDgKLLASAGHDKKVVLWNM 529
           789*******999****************7 PP

UBD/Beta-Prp

   S: 92   ghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgk.llrtltgghtd 181
             +++v++++fs +g+ l+s++hd+ + +w++++ q  + t ++h++v++ v++ p+++ l+++s D+ vrlWd ++ + +l++ tg h +
   Q: 498  TRNSKVTCCHFSSDGKLLASAGHDKKVVLWNMDNLQTEN-TTEEHKSVITDVRFRPNSSQLATSSVDKSVRLWDANNPSyCLHEYTG-HSS 586
           467888899999988999999999999999999999888.88889999999999998889999999999999998665448888888.999 PP
   S: 182  svyslsfdsngkel.vsgsldgtvklwdlqtgecvr 216
           ++ sl+f++++++l    ++d+ +++w++   + vr
   Q: 587  PIMSLDFHPKKTDLfCFSDYDNEIRYWNINPFTSVR 622
           999999988886541556788999999887443344 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MAQQSNWEAD KMLDVYIHDY LLKRKLHNSA KAFMAEGKVA TDPVAIDAPG GFLFEWWSVF 60
WDIFIARTNE KHSDAAAAYI EAQQSKTREQ QQMQLQLMQR HNAQMQRRDP SHPALSSSLN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGTCTCCTTC AGTTGCACTC AAAAAAGAAA ATCCAGGCAC CGATTTTTTC TCTCTAGTGA 60
TTGAGGTTTT TTTGTTTTTG GTTAATTTTG CTTTGAATTT AAGGATTTTC GTGCAGAGAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR006594--LisH
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08513--LisH
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00667--LisH
SM00320--WD40

KEGG

pop:POPTR_0002s24320g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002717	Amborella trichopoda	59.29	0.00e+00	870.00
IUUC-Gma-044268	Glycine max	69.99	0.00e+00	1009.00
IUUC-Mtr-058727	Medicago truncatula	73.94	0.00e+00	1053.00
IUUC-Oba-075243	Oryza barthii	61.45	0.00e+00	897.00
IUUC-Obr-076847	Oryza brachyantha	62.19	0.00e+00	894.00
IUUC-Ogu-077963	Oryza glumaepatula	61.07	0.00e+00	891.00
IUUC-Ome-081723	Oryza meridionalis	60.52	0.00e+00	886.00
IUUC-Oru-084534	Oryza rufipogon	61.33	0.00e+00	893.00
IUUC-Ppe-101584	Prunus persica	80.03	0.00e+00	1155.00
IUUC-Sly-111127	Solanum lycopersicum	72.25	0.00e+00	1049.00
IUUC-Stu-112404	Solanum tuberosum	72.67	0.00e+00	1047.00
IUUC-Tca-121725	Theobroma cacao	76.62	0.00e+00	1083.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence