iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bol-016398

Ensembl Protein ID

Bo8g116110.1

UniProt Accession

A0A0D3DZ64; A0A0D3DZ64_BRAOL

Protein Name

tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; WD repeat-containing protein 4 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bo8g116110	Bo8g116110.1	Bo8g116110.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.90e-16	59.0	194	235

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf......sdtllvsGsdDgtikvWDlrtgvll 36
           gHt+ vtc+af      +  +l sGs+D t+++WD+ +g ll
   Q: 194  GHTEFVTCIAFvsnpelTQSYLMSGSGDSTVRLWDIASGSLL 235
           8***********986642267**************9999877 PP

Organism

Brassica oleracea

Functional Description
(View)

Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit.

Protein Sequence
(Fasta)

MEEPHIEEGH NQNKLLDVAP ALISVHPSHK SIAATVGSDL RVFNLIDNSP VTLVDESNES 60
FHKDSVRAIR YSASGKLFVS TGDDKLVKIW SAESWRCLNT ICSEKRVTAV AVSHDDSYVC 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGAAGAAC CTCACATCGA AGAAGGACAT AACCAGAACA AACTACTCGA TGTTGCTCCT 60
GCATTGATAT CAGTTCATCC ATCTCACAAA TCTATCGCTG CCACCGTCGG TTCGGATCTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0819--tRNA processing
KW-0853--WD repeat

Interpro

IPR028884--Trm82
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus
GO:0036265--P:RNA (guanine-N7)-methylation
GO:0030488--P:tRNA methylation

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002431	Amborella trichopoda	54.40	3.00e-36	143.00
IUUC-Apl-003975	Anas platyrhynchos	31.11	1.00e-26	113.00
IUUC-Aca-005170	Anolis carolinensis	30.67	4.00e-18	85.50
IUUC-Bta-012788	Bos taurus	39.23	4.00e-25	108.00
IUUC-Bra-016644	Brassica rapa	92.82	0.00e+00	752.00
IUUC-Cpo-021963	Cavia porcellus	38.04	4.00e-24	105.00
IUUC-Dre-028427	Danio rerio	29.75	8.00e-28	117.00
IUUC-Dor-030522	Dipodomys ordii	27.40	4.00e-26	112.00
IUUC-Dme-032136	Drosophila melanogaster	30.46	1.00e-13	70.90
IUUC-Fca-035833	Felis catus	38.59	2.00e-23	103.00
IUUC-Fal-037497	Ficedula albicollis	28.44	6.00e-27	114.00
IUUC-Gga-040547	Gallus gallus	29.57	2.00e-25	110.00
IUUC-Gac-041761	Gasterosteus aculeatus	27.84	9.00e-25	107.00
IUUC-Gma-043722	Glycine max	60.34	9.00e-136	476.00
IUUC-Lch-050682	Latimeria chalumnae	38.01	1.00e-29	124.00
IUUC-Lpe-050712	Leersia perrieri	50.69	2.00e-111	395.00
IUUC-Loc-052599	Lepisosteus oculatus	30.83	3.00e-28	119.00
IUUC-Laf-054390	Loxodonta africana	39.78	4.00e-27	115.00
IUUC-Mtr-058600	Medicago truncatula	62.47	3.00e-140	491.00
IUUC-Mga-059876	Meleagris gallopavo	29.47	5.00e-27	114.00
IUUC-Ont-071555	Oreochromis niloticus	31.43	3.00e-25	109.00
IUUC-Oba-075355	Oryza barthii	47.03	2.00e-101	362.00
IUUC-Obr-076769	Oryza brachyantha	52.53	1.00e-121	429.00
IUUC-Ogl-077168	Oryza glaberrima	51.68	2.00e-117	415.00
IUUC-Ogu-078275	Oryza glumaepatula	46.79	3.00e-100	358.00
IUUC-Oin-079207	Oryza indica	51.68	2.00e-117	415.00
IUUC-Ome-081169	Oryza meridionalis	36.47	1.00e-56	213.00
IUUC-Oni-082437	Oryza nivara	47.27	5.00e-101	361.00
IUUC-Oru-084380	Oryza rufipogon	46.79	9.00e-101	360.00
IUUC-Osa-085327	Oryza sativa	51.44	9.00e-117	413.00
IUUC-Ola-086716	Oryzias latipes	29.41	7.00e-27	114.00
IUUC-Olu-087708	Ostreococcus lucimarinus	28.76	5.00e-38	151.00
IUUC-Oar-090239	Ovis aries	39.23	5.00e-25	108.00
IUUC-Psi-093792	Pelodiscus sinensis	28.46	4.00e-24	105.00
IUUC-Ppa-095757	Physcomitrella patens	41.36	2.00e-79	289.00
IUUC-Pfo-096465	Poecilia formosa	30.11	6.00e-25	108.00
IUUC-Pop-098979	Populus trichocarpa	58.31	4.00e-138	484.00
IUUC-Pca-100753	Procavia capensis	48.98	6.00e-17	81.60
IUUC-Ppe-101515	Prunus persica	62.56	3.00e-148	517.00
IUUC-Sja-107780	Schizosaccharomyces japonicus	25.16	9.00e-18	84.30
IUUC-Sit-110020	Setaria italica	52.66	3.00e-118	417.00
IUUC-Sly-111543	Solanum lycopersicum	56.61	1.00e-135	476.00
IUUC-Sbi-114061	Sorghum bicolor	51.26	2.00e-119	421.00
IUUC-Tgu-117321	Taeniopygia guttata	27.81	4.00e-22	98.60
IUUC-Tru-118454	Takifugu rubripes	34.38	2.00e-27	116.00
IUUC-Tni-119894	Tetraodon nigroviridis	35.32	6.00e-23	101.00
IUUC-Tca-121746	Theobroma cacao	61.54	8.00e-148	516.00
IUUC-Tbe-127683	Tupaia belangeri	50.00	3.00e-16	79.30
IUUC-Ttr-129056	Tursiops truncatus	39.23	7.00e-25	107.00
IUUC-Vvi-131428	Vitis vinifera	62.41	1.00e-152	532.00
IUUC-Xma-133605	Xiphophorus maculatus	30.30	1.00e-23	103.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence