iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Vvi-131689

UUCD1 version

UUC-ViV-00868

Ensembl Protein ID

VIT_09s0002g04810.t01

UniProt Accession

F6HX23; F6HX23_VITVI

Genbank Protein ID

CCB59493.1

Protein Name

Coatomer subunit beta'

Genbank Nucleotide ID

FN596494

Gene Name

VIT_09s0002g04810

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
VIT_09s0002g04810	VIT_09s0002g04810.t01	VIT_09s0002g04810.t01

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.20e-35	119.7	209	249
UBD/Beta-Prp	7.30e-68	229.5	39	314

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf...sd.tllvsGsdDgtikvWDlrtgvllks 38
           H+ +v+c+++    d ++l++GsdD+t kvWD+ t  ++++
   Q: 209  HQKGVNCVDYftgGDkPYLITGSDDHTAKVWDYQTKSCVQT 249
           9999****966*9778*******************999986 PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkgheds 96
           +++++++v+ +p++++++++ ++gt+ +w+++++++ +s++  e +v++ kf+ ++++ v g++D++i+v++++t + v ++++h+d+
   Q: 39   RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDY 126
           5678999********************************************************************************* PP
   S: 97   vlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsv 183
           +++++++p+  +++s s+d  i++wd+e+g++  ++++gh++ v+ v+++p++ n ++s+slDrt+++W+l + +   tl   h++ v
   Q: 127  IRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDtNTFASASLDRTIKIWNLGSPDPNFTLDA-HQKGV 213
           *******************************9999*********************************************98.***** PP
   S: 184  ysls..fdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvis 269
           ++++     ++++l++gs+d t k+wd+qt++cv+tl+ght nv+ v f+p+  ++++gs+Dg++riW  ++  l +tl++  ++v++
   Q: 214  NCVDyfTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWA 301
           ****6444555***************************************************************************** PP
   S: 270  vavlsfgdnvlvl 282
           v +++ +++v++ 
   Q: 302  VGYMKGSRRVVIG 314
           *997777777643 PP

Organism

Vitis vinifera

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Protein Sequence
(Fasta)

MICASASGFS LDLVRICFDL MFLLHYPLRL EIKRKLAQRS ERVKSVDLHP SEPWILASLY 60
SGTVCIWNYQ SQTMAKSFEV TELPVRSAKF IARKQWVVAG ADDMFIRVYN YNTMDKVKVF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGATTTGTG CTTCCGCTTC TGGATTTAGC TTAGATCTGG TTCGAATCTG CTTCGATTTG 60
ATGTTCTTAT TGCATTACGT GCCTAATTAT AGAAATTTTC GCTAATTTGA TTGAAATTAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030126--C:COPI vesicle coat
GO:0000139--C:Golgi membrane
GO:0016021--C:integral component of membrane
GO:0005198--F:structural molecule activity
GO:0006888--P:ER to Golgi vesicle-mediated transport
GO:0006891--P:intra-Golgi vesicle-mediated transport
GO:0006886--P:intracellular protein transport
GO:0006890--P:retrograde vesicle-mediated transport, Golgi to ER

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000654	Aegilops tauschii	76.22	0.00e+00	1389.00
IUUC-Aml-002154	Ailuropoda melanoleuca	60.14	0.00e+00	1120.00
IUUC-Atr-003090	Amborella trichopoda	85.01	0.00e+00	1536.00
IUUC-Apl-003976	Anas platyrhynchos	60.65	0.00e+00	1118.00
IUUC-Aca-004301	Anolis carolinensis	61.21	0.00e+00	1118.00
IUUC-Aly-006508	Arabidopsis lyrata	89.28	0.00e+00	1600.00
IUUC-Ath-007635	Arabidopsis thaliana	89.04	0.00e+00	1594.00
IUUC-Ago-007914	Ashbya gossypii	47.36	0.00e+00	728.00
IUUC-Acl-008237	Aspergillus clavatus	53.29	0.00e+00	917.00
IUUC-Afl-008535	Aspergillus flavus	54.34	0.00e+00	867.00
IUUC-Afu-008845	Aspergillus fumigatus	53.33	0.00e+00	904.00
IUUC-Ani-009135	Aspergillus nidulans	55.56	0.00e+00	893.00
IUUC-Ang-009654	Aspergillus niger	57.58	0.00e+00	827.00
IUUC-Aor-009939	Aspergillus oryzae	52.86	0.00e+00	926.00
IUUC-Ate-010355	Aspergillus terreus	53.53	0.00e+00	888.00
IUUC-Ame-010922	Astyanax mexicanus	56.81	0.00e+00	965.00
IUUC-Bgr-012249	Blumeria graminis	53.03	0.00e+00	900.00
IUUC-Bta-013579	Bos taurus	62.38	0.00e+00	973.00
IUUC-Bci-013866	Botrytis cinerea	54.77	0.00e+00	905.00
IUUC-Bdi-015046	Brachypodium distachyon	85.70	0.00e+00	1524.00
IUUC-Bol-015731	Brassica oleracea	86.67	0.00e+00	1597.00
IUUC-Bra-017758	Brassica rapa	87.47	0.00e+00	1585.00
IUUC-Cel-018387	Caenorhabditis elegans	53.44	0.00e+00	978.00
IUUC-Cja-019145	Callithrix jacchus	59.91	0.00e+00	1118.00
IUUC-Cfa-020564	Canis familiaris	60.14	0.00e+00	1119.00
IUUC-Cpo-022201	Cavia porcellus	61.37	0.00e+00	1118.00
IUUC-Cre-022938	Chlamydomonas reinhardtii	66.95	0.00e+00	1122.00
IUUC-Csa-023383	Chlorocebus sabaeus	65.91	0.00e+00	837.00
IUUC-Cho-024454	Choloepus hoffmanni	59.16	0.00e+00	926.00
IUUC-Cin-025681	Ciona intestinalis	60.02	0.00e+00	1001.00
IUUC-Csv-026012	Ciona savignyi	59.05	0.00e+00	974.00
IUUC-Cgl-026649	Colletotrichum gloeosporioides	50.92	0.00e+00	818.00
IUUC-Cne-026986	Cryptococcus neoformans	49.82	0.00e+00	868.00
IUUC-Cme-027219	Cyanidioschyzon merolae	49.59	0.00e+00	882.00
IUUC-Dre-027846	Danio rerio	61.86	0.00e+00	1115.00
IUUC-Dor-030462	Dipodomys ordii	59.61	0.00e+00	853.00
IUUC-Dse-031268	Dothistroma septosporum	53.72	0.00e+00	900.00
IUUC-Dme-031791	Drosophila melanogaster	56.81	0.00e+00	1006.00
IUUC-Ete-033166	Echinops telfairi	58.68	0.00e+00	704.00
IUUC-Eca-034180	Equus caballus	58.57	0.00e+00	1075.00
IUUC-Eeu-035086	Erinaceus europaeus	49.90	1.00e-126	446.00
IUUC-Fca-036265	Felis catus	60.02	0.00e+00	1117.00
IUUC-Fal-037202	Ficedula albicollis	60.17	0.00e+00	1071.00
IUUC-Fox-037711	Fusarium oxysporum	55.15	0.00e+00	866.00
IUUC-Fso-038268	Fusarium solani	54.37	0.00e+00	871.00
IUUC-Gmo-039046	Gadus morhua	61.38	0.00e+00	1103.00
IUUC-Ggr-039863	Gaeumannomyces graminis	53.74	0.00e+00	887.00
IUUC-Gga-041112	Gallus gallus	61.61	0.00e+00	1123.00
IUUC-Gac-041733	Gasterosteus aculeatus	61.50	0.00e+00	1072.00
IUUC-Gma-042910	Glycine max	92.93	0.00e+00	1674.00
IUUC-Ggo-044984	Gorilla gorilla	59.91	0.00e+00	1117.00
IUUC-Hsa-046698	Homo sapiens	59.91	0.00e+00	1117.00
IUUC-Hvu-047669	Hordeum vulgare	90.68	0.00e+00	701.00
IUUC-Itr-048212	Ictidomys tridecemlineatus	61.26	0.00e+00	1113.00
IUUC-Kpa-049265	Komagataella pastoris	51.79	0.00e+00	845.00
IUUC-Lch-050473	Latimeria chalumnae	62.59	0.00e+00	1116.00
IUUC-Lpe-051579	Leersia perrieri	86.12	0.00e+00	1531.00
IUUC-Loc-052675	Lepisosteus oculatus	61.42	0.00e+00	1116.00
IUUC-Lma-053218	Leptosphaeria maculans	52.57	0.00e+00	873.00
IUUC-Laf-053757	Loxodonta africana	61.35	0.00e+00	1114.00
IUUC-Mcc-054859	Macaca mulatta	59.91	0.00e+00	1118.00
IUUC-Meu-056174	Macropus eugenii	52.39	4.00e-111	394.00
IUUC-Mor-057264	Magnaporthe oryzae	54.36	0.00e+00	878.00
IUUC-Mpo-057538	Magnaporthe poae	53.50	0.00e+00	892.00
IUUC-Mtr-058618	Medicago truncatula	92.56	0.00e+00	1636.00
IUUC-Mla-058937	Melampsora laricipopulina	53.89	0.00e+00	901.00
IUUC-Mga-059875	Meleagris gallopavo	61.47	0.00e+00	1120.00
IUUC-Mvi-060240	Microbotryum violaceum	53.17	0.00e+00	909.00
IUUC-Mmr-061261	Microcebus murinus	61.37	0.00e+00	1117.00
IUUC-Mdo-062076	Monodelphis domestica	61.00	0.00e+00	1125.00
IUUC-Mmu-063324	Mus musculus	61.37	0.00e+00	1118.00
IUUC-Mac-064636	Musa acuminata	87.51	0.00e+00	1589.00
IUUC-Mpu-065961	Mustela putorius furo	60.02	0.00e+00	1117.00
IUUC-Mlu-067059	Myotis lucifugus	59.33	0.00e+00	1105.00
IUUC-Nfi-068277	Neosartorya fischeri	53.17	0.00e+00	893.00
IUUC-Ncr-068659	Neurospora crassa	53.73	0.00e+00	906.00
IUUC-Nle-069034	Nomascus leucogenys	61.26	0.00e+00	1117.00
IUUC-Opr-070334	Ochotona princeps	63.09	0.00e+00	1007.00
IUUC-Ont-071563	Oreochromis niloticus	61.50	0.00e+00	1109.00
IUUC-Oan-073416	Ornithorhynchus anatinus	60.91	0.00e+00	1062.00
IUUC-Ocu-074522	Oryctolagus cuniculus	59.91	0.00e+00	1112.00
IUUC-Oba-075760	Oryza barthii	86.87	0.00e+00	1553.00
IUUC-Obr-076201	Oryza brachyantha	85.96	0.00e+00	1538.00
IUUC-Ogl-077450	Oryza glaberrima	87.69	0.00e+00	1577.00
IUUC-Ogu-078994	Oryza glumaepatula	86.87	0.00e+00	1551.00
IUUC-Oin-079211	Oryza indica	85.70	0.00e+00	1526.00
IUUC-Olo-080731	Oryza longistaminata	85.63	0.00e+00	1528.00
IUUC-Ome-081762	Oryza meridionalis	80.43	0.00e+00	1436.00
IUUC-Oni-082324	Oryza nivara	86.87	0.00e+00	1552.00
IUUC-Opu-083400	Oryza punctata	82.67	0.00e+00	1499.00
IUUC-Oru-084829	Oryza rufipogon	86.87	0.00e+00	1552.00
IUUC-Osa-086026	Oryza sativa	87.92	0.00e+00	1580.00
IUUC-Ola-087245	Oryzias latipes	62.21	0.00e+00	1107.00
IUUC-Olu-087655	Ostreococcus lucimarinus	66.29	0.00e+00	1146.00
IUUC-Oga-088163	Otolemur garnettii	59.17	0.00e+00	1063.00
IUUC-Oar-089842	Ovis aries	60.14	0.00e+00	1121.00
IUUC-Ptr-090501	Pan troglodytes	61.26	0.00e+00	1118.00
IUUC-Pan-092011	Papio anubis	59.91	0.00e+00	1118.00
IUUC-Psi-093308	Pelodiscus sinensis	61.49	0.00e+00	1122.00
IUUC-Pma-094695	Petromyzon marinus	59.15	0.00e+00	988.00
IUUC-Pno-094785	Phaeosphaeria nodorum	59.79	3.00e-105	374.00
IUUC-Ppa-095911	Physcomitrella patens	80.65	0.00e+00	1441.00
IUUC-Pfo-096587	Poecilia formosa	62.45	0.00e+00	1109.00
IUUC-Pab-097926	Pongo abelii	59.95	0.00e+00	1047.00
IUUC-Pop-099634	Populus trichocarpa	92.07	0.00e+00	1658.00
IUUC-Pca-100965	Procavia capensis	59.22	0.00e+00	1085.00
IUUC-Ppe-101470	Prunus persica	93.60	0.00e+00	1691.00
IUUC-Pva-102451	Pteropus vampyrus	58.56	0.00e+00	847.00
IUUC-Pgr-103453	Puccinia graminis	53.83	0.00e+00	912.00
IUUC-Ptt-103868	Puccinia triticina	53.83	0.00e+00	907.00
IUUC-Pte-104274	Pyrenophora teres	53.72	0.00e+00	902.00
IUUC-Pyt-104794	Pyrenophora triticirepentis	53.05	0.00e+00	852.00
IUUC-Rno-105979	Rattus norvegicus	54.12	0.00e+00	820.00
IUUC-Sce-106269	Saccharomyces cerevisiae	47.10	0.00e+00	754.00
IUUC-Sha-106905	Sarcophilus harrisii	61.07	0.00e+00	1125.00
IUUC-Sja-107838	Schizosaccharomyces japonicus	46.90	0.00e+00	778.00
IUUC-Spo-108299	Schizosaccharomyces pombe	46.84	0.00e+00	799.00
IUUC-Smo-108828	Selaginella moellendorffii	81.37	0.00e+00	1412.00
IUUC-Sit-110239	Setaria italica	86.67	0.00e+00	1574.00
IUUC-Sly-111775	Solanum lycopersicum	88.63	0.00e+00	1601.00
IUUC-Stu-112906	Solanum tuberosum	89.05	0.00e+00	1458.00
IUUC-Sar-113472	Sorex araneus	57.42	0.00e+00	763.00
IUUC-Sbi-113801	Sorghum bicolor	85.80	0.00e+00	1538.00
IUUC-Sre-115040	Sporisorium reilianum	53.11	0.00e+00	905.00
IUUC-Ssc-115593	Sus scrofa	61.26	0.00e+00	1117.00
IUUC-Tgu-117239	Taeniopygia guttata	61.49	0.00e+00	1121.00
IUUC-Tru-118025	Takifugu rubripes	62.15	0.00e+00	1110.00
IUUC-Tsy-118824	Tarsius syrichta	58.35	0.00e+00	787.00
IUUC-Tni-120142	Tetraodon nigroviridis	61.86	0.00e+00	1101.00
IUUC-Tca-121613	Theobroma cacao	95.10	0.00e+00	1703.00
IUUC-Tre-122072	Trichoderma reesei	53.99	0.00e+00	902.00
IUUC-Tvi-122546	Trichoderma virens	53.20	0.00e+00	883.00
IUUC-Tae-125488	Triticum aestivum	86.55	0.00e+00	1565.00
IUUC-Tur-126283	Triticum urartu	77.08	0.00e+00	1387.00
IUUC-Tme-127041	Tuber melanosporum	53.80	0.00e+00	915.00
IUUC-Tbe-127770	Tupaia belangeri	60.75	0.00e+00	890.00
IUUC-Ttr-129294	Tursiops truncatus	61.14	0.00e+00	1114.00
IUUC-Uma-129351	Ustilago maydis	51.40	0.00e+00	890.00
IUUC-Vda-129716	Verticillium dahliae	54.37	0.00e+00	914.00
IUUC-Vpa-130037	Vicugna pacos	50.41	2.00e-131	462.00
IUUC-Xtr-132633	Xenopus tropicalis	60.92	0.00e+00	1112.00
IUUC-Xma-133347	Xiphophorus maculatus	62.70	0.00e+00	1111.00
IUUC-Yli-134455	Yarrowia lipolytica	51.40	0.00e+00	813.00
IUUC-Zma-135867	Zea mays	86.61	0.00e+00	1566.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence