iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bra-016893

Ensembl Protein ID

Bra026751.1-P

UniProt Accession

M4ED91; M4ED91_BRARP

Protein Name

Uncharacterized protein

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bra026751	Bra026751.1	Bra026751.1-P

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.30e-20	72.8	461	499
UBD/Beta-Prp	2.00e-46	159.5	421	749

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tl.lvsGsdDgtikvWDlrtgvll 36
           H ++v++++f  ++  l +++++dD+tikvWD  tgv+ 
   Q: 461  HVGGVNDISFstPNkQLcVITCGDDKTIKVWDAATGVKR 499
           999*******98664334799***********9999875 PP

UBD/Beta-Prp

   S: 14   tcvkfspdksllatgsrdgtikvwdvttgkl...lrslsgheaevtavkfspdgk..ilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfsp 104
           + v +spd+sl+ +++ ++ +++++++ g       ++  h ++v++++fs   k    +t+++D+tikvwd  tg   ht++ghe+ v+s+  + 
   Q: 421  NRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDmrqHLEIDAHVGGVNDISFSTPNKqlCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHY 516
           55778**********************9998333334589***********88777899********************************85554 PP
   S: 105  ..sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGsl..Dr..tvrlWdlktgkllrtltgghtdsvyslsfdsngke 194
             + +++ s+  d  i+ w  ++     + +++  ++ ++++++ dg  l+s+++  D+   +  W+ + g + rt +g h++s   ++fd ++++
   Q: 517  keNIQFIFSTALDGKIKAWLYDNMGSRVDYDAPG-RWCTTMAYSADGTRLFSCGTskDGesYIVEWNESEGAVKRTYQGFHKRSLGVVQFDTTKNR 611
           4388***************999877777566655.5999999*****999998652244224666999**************************** PP
   S: 195  lvsgsldgtvklwdlqtgecvrtlnght..dnvksvrfspnderlvsgssDgsiriW.dlrsgdllktlqlhn....................... 264
            +++++d ++k+wd+ + + + +  g    +   ++rf +++ +l++ + +++i++  +++   ll+t+++                         
   Q: 612  YLAAGDDFSIKFWDMDNVQLLTAIDGDGglQASPRIRFNKEGSLLAVSGNENVIKVMaNSDGLRLLHTFENVSsesskpainslaaaaaaaatsaa 707
           ****************99999998887744555669999*****************8899999******999988999999888888888888888 PP
   S: 265  ....ssvisvavlsfgdnvl......vlgsedskvniwklkk 296
                +v+s+++++ + +++      ++ ++++k +iwkl++
   Q: 708  adrsANVVSIQAMNGDARNMvdvkpvITEESNDKSKIWKLTE 749
           888888888888666666666777767777799999999986 PP

Organism

Brassica rapa

Protein Sequence
(Fasta)

MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF 60
TKVDDNRYSM KIFFEIRKQK YLEALDKHDR PKAVEILVKD LKVFSTFNEE LFKEITQLLT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCTTCTC TTAGTAGAGA GCTTGTGTTC CTGATCTTAC AGTTTCTCGA TGAAGAGAAG 60
TTTAAAGAGA CTGTTCACAA GTAAAATCTT GCCTCCTACT TCGATCTAAT GAACTGTGTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR006595--CTLH_C
IPR006594--LisH
IPR027728--Topless_fam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50897--CTLH
PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00668--CTLH
SM00667--LisH
SM00320--WD40

Gene Ontology

GO:0006355--P:regulation of transcription, DNA-templated

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000565	Aegilops tauschii	76.33	0.00e+00	1765.00
IUUC-Atr-002737	Amborella trichopoda	76.54	0.00e+00	1721.00
IUUC-Aly-005995	Arabidopsis lyrata	95.76	0.00e+00	2142.00
IUUC-Ath-007021	Arabidopsis thaliana	96.02	0.00e+00	2149.00
IUUC-Bdi-014914	Brachypodium distachyon	76.03	0.00e+00	1731.00
IUUC-Bol-015359	Brassica oleracea	98.76	0.00e+00	2154.00
IUUC-Gma-043911	Glycine max	83.91	0.00e+00	1897.00
IUUC-Lpe-051514	Leersia perrieri	74.67	0.00e+00	1653.00
IUUC-Mtr-058037	Medicago truncatula	81.75	0.00e+00	1862.00
IUUC-Mac-065382	Musa acuminata	77.21	0.00e+00	1773.00
IUUC-Oba-075912	Oryza barthii	77.26	0.00e+00	1741.00
IUUC-Obr-076921	Oryza brachyantha	76.62	0.00e+00	1746.00
IUUC-Ogl-077334	Oryza glaberrima	76.99	0.00e+00	1756.00
IUUC-Ogu-078494	Oryza glumaepatula	76.99	0.00e+00	1756.00
IUUC-Oin-079720	Oryza indica	75.45	0.00e+00	1738.00
IUUC-Olo-081034	Oryza longistaminata	75.39	0.00e+00	1736.00
IUUC-Ome-081778	Oryza meridionalis	76.90	0.00e+00	1756.00
IUUC-Oni-082412	Oryza nivara	77.26	0.00e+00	1738.00
IUUC-Opu-083406	Oryza punctata	75.02	0.00e+00	1690.00
IUUC-Oru-084328	Oryza rufipogon	76.98	0.00e+00	1744.00
IUUC-Osa-085765	Oryza sativa	76.99	0.00e+00	1756.00
IUUC-Ppa-095845	Physcomitrella patens	67.75	0.00e+00	1548.00
IUUC-Pop-098876	Populus trichocarpa	81.54	0.00e+00	1872.00
IUUC-Ppe-101370	Prunus persica	84.25	0.00e+00	1936.00
IUUC-Smo-109617	Selaginella moellendorffii	67.98	0.00e+00	1496.00
IUUC-Sit-110288	Setaria italica	76.36	0.00e+00	1733.00
IUUC-Sly-111739	Solanum lycopersicum	81.87	0.00e+00	1863.00
IUUC-Sbi-114078	Sorghum bicolor	77.09	0.00e+00	1736.00
IUUC-Tca-121628	Theobroma cacao	84.45	0.00e+00	1898.00
IUUC-Tae-125600	Triticum aestivum	77.08	0.00e+00	1768.00
IUUC-Tur-126412	Triticum urartu	76.70	0.00e+00	1770.00
IUUC-Vvi-131079	Vitis vinifera	83.27	0.00e+00	1906.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence