iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007071

UUCD1 version

UUC-ArT-01473

Ensembl Protein ID

AT2G42360.1

UniProt Accession

Q9SLC3; Q4FE38; ATL41_ARATH

Genbank Protein ID

AAZ14057.1; AAD23719.1; AEC10111.1; AAL69468.1; BAF00187.1

Protein Name

E3 ubiquitin-protein ligase ATL41; RING-H2 finger protein ATL41; RING-type E3 ubiquitin transferase ATL41

Genbank Nucleotide ID

DQ086853; AC005956; CP002685; AY074652; AK228239

Gene Name

ATL41; At2g42360; MHK10.8

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT2G42360	AT2G42360.1	AT2G42360.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
Protein-protein Interaction
HINT	Mentha
Protein Expression/Proteomics

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/RING	RING	16339806

Classification

Family	E-value	Score	Start	End
E3 activity/RING/RING	8.00e-06	27.2	108	150

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf..kdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           Ca+Cl+ +  +d  + lp C+H+fh dC+  w        +  +CP+Cr
   Q: 108  CAVCLSVLkeQDKARELPnCKHIFHVDCVDTW------LTTCSTCPVCR 150
           ******9955333777888*************......**********8 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8, UBC10, UBC11, UBC28, UBC29, UBC30, UBC35 and UBC36 in vitro.

Protein Sequence
(Fasta)

MSSNDRDHRR FNSDHHSFWP NPSTYDLNSK IMLAAVASLS GVILIVFALH LYARFVLRRR 60
REAFRGLPVI FRHPFEMPKR GLNPTVIASL PTFTVGATDG VAASATECAV CLSVLKEQDK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTGAAATCAT AATAGGCAAA TTCAGTCCAC AAATTTTTTA CGTAGGATTT TGATATTTTC 60
CACTCTTTAT ATATACAGTC TATAATCTTC AAACCTATCA CCTATAAATA ATCTACAATC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0016567--P:protein ubiquitination

KEGG

ath:AT2G42360

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005547	Arabidopsis lyrata	91.10	1.00e-101	361.00
IUUC-Bdi-014715	Brachypodium distachyon	48.28	5.00e-21	93.60
IUUC-Bol-016176	Brassica oleracea	68.31	4.00e-69	253.00
IUUC-Bra-016906	Brassica rapa	68.88	3.00e-73	267.00
IUUC-Hvu-047434	Hordeum vulgare	36.25	3.00e-20	91.30
IUUC-Oba-075575	Oryza barthii	40.46	2.00e-22	98.20
IUUC-Ogl-077104	Oryza glaberrima	40.46	2.00e-22	98.20
IUUC-Oin-079390	Oryza indica	40.46	2.00e-22	98.20
IUUC-Oni-082882	Oryza nivara	40.46	2.00e-22	98.20
IUUC-Oru-084452	Oryza rufipogon	40.46	5.00e-22	97.10
IUUC-Osa-085457	Oryza sativa	40.46	5.00e-22	97.10
IUUC-Pop-098962	Populus trichocarpa	53.25	4.00e-33	133.00
IUUC-Ppe-101543	Prunus persica	44.98	5.00e-41	160.00
IUUC-Sit-110606	Setaria italica	35.54	4.00e-27	114.00
IUUC-Sly-111845	Solanum lycopersicum	39.34	2.00e-34	137.00
IUUC-Stu-112253	Solanum tuberosum	42.86	8.00e-44	169.00
IUUC-Sbi-113906	Sorghum bicolor	33.33	3.00e-22	97.80
IUUC-Tca-121522	Theobroma cacao	38.60	2.00e-29	121.00
IUUC-Tae-124538	Triticum aestivum	39.51	5.00e-25	107.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence