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Tag Content
UUCD2 ID IUUC-Ocu-073832
UUCD1 version UUC-OrC-00458
Ensembl Protein ID ENSOCUP00000010601.1
UniProt Accession G1T317; G1T317_RABIT
Genbank Protein ID ENSOCUP00000010601
Protein Name E3 ubiquitin-protein ligase RNF168; RING finger protein 168; RING-type E3 ubiquitin transferase RNF168
Genbank Nucleotide ID AAGW02013778
Gene Name RNF168
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSOCUG00000012315.2 ENSOCUT00000012314.2 ENSOCUP00000010601.1
Status Unreviewed
Classification
Family E-Value Score Start End
UBD/Alpha-Helix/MIU 3.40e-08 33.2 169 189
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   UBD/Alpha-Helix/MIU

   S: 2    qkQprtDlELAqqLQqEeyqq 22
    ++Q++ D+ LA++L+++++++
   Q: 169 EEQLKNDEKLARRLSIDINNF 189
    79*****************98 PP
   

Organism Oryctolagus cuniculus
Functional Description
(View)

Functional Description



     E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
Protein Sequence
(Fasta)
MAVPQDNIPS LSECRCGICV DILIEPVTLP CNHTLCNPCF QSTVEKANLC CPFCRRRVSS 60
WARYHTRRKT LVNMKLWEMI QKHYPRECKL RASGQESGDL VEDYQPIRLI SKPGELRREY 120
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Protein Fasta Sequence



>IUUC-Ocu-073832|UBD,MIU|Oryctolagus cuniculus
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Nucleotide Sequence
(Fasta)
AGCGACCCTT AGATCACTCA TTAATAGAAA CAAAAAGGTA CTCTTGTACT GCGGGCAGAA 60
TTATAAAAAT TAATGTTCGA GTCTTTAATT CGTTCTGAGG CTTCACGTTT TCTGTCCACA 120
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Nucleotide Fasta Sequence



>IUUC-Ocu-073832|UBD,MIU|Oryctolagus cuniculus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0156--Chromatin regulator
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0227--DNA damage
KW-0234--DNA repair
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0808--Transferase
KW-0832--Ubl conjugation
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR034725--RNF168
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

SMART

SM00184--RING

Gene Ontology

GO:0005829--C:cytosol
GO:0005654--C:nucleoplasm
GO:0043234--C:protein complex
GO:0035861--C:site of double-strand break
GO:0000151--C:ubiquitin ligase complex
GO:0031491--F:nucleosome binding
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0006302--P:double-strand break repair
GO:0070535--P:histone H2A K63-linked ubiquitination
GO:0035518--P:histone H2A monoubiquitination
GO:0036351--P:histone H2A-K13 ubiquitination
GO:0036352--P:histone H2A-K15 ubiquitination
GO:0034244--P:negative regulation of transcription elongation from RNA polymerase II promoter
GO:0045739--P:positive regulation of DNA repair
GO:0010212--P:response to ionizing radiation
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG ocu:100348840
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000755 Aegilops tauschii 35.44 1.00e-10 60.80
IUUC-Aml-001573 Ailuropoda melanoleuca 69.70 0.00e+00 643.00
IUUC-Atr-002992 Amborella trichopoda 39.73 5.00e-11 61.60
IUUC-Apl-003963 Anas platyrhynchos 43.04 1.00e-61 230.00
IUUC-Aca-004420 Anolis carolinensis 67.52 1.00e-45 177.00
IUUC-Ath-007019 Arabidopsis thaliana 38.67 7.00e-10 59.30
IUUC-Ame-011521 Astyanax mexicanus 53.14 4.00e-37 149.00
IUUC-Bta-013002 Bos taurus 68.47 0.00e+00 638.00
IUUC-Cja-019945 Callithrix jacchus 68.48 0.00e+00 650.00
IUUC-Cfa-020533 Canis familiaris 69.76 0.00e+00 648.00
IUUC-Cpo-021643 Cavia porcellus 57.81 1.00e-126 446.00
IUUC-Csa-023638 Chlorocebus sabaeus 68.01 0.00e+00 649.00
IUUC-Cho-024319 Choloepus hoffmanni 67.66 3.00e-169 588.00
IUUC-Cin-025679 Ciona intestinalis 40.46 1.00e-23 103.00
IUUC-Csv-026052 Ciona savignyi 36.36 7.00e-20 90.50
IUUC-Dre-028519 Danio rerio 47.11 7.00e-38 151.00
IUUC-Dno-029294 Dasypus novemcinctus 69.70 0.00e+00 669.00
IUUC-Ete-032714 Echinops telfairi 48.08 1.00e-69 257.00
IUUC-Eca-033343 Equus caballus 72.15 0.00e+00 691.00
IUUC-Eeu-034633 Erinaceus europaeus 34.56 2.00e-17 83.60
IUUC-Fca-036251 Felis catus 70.77 0.00e+00 672.00
IUUC-Fal-037048 Ficedula albicollis 44.54 2.00e-73 270.00
IUUC-Gmo-039400 Gadus morhua 46.96 9.00e-31 125.00
IUUC-Gga-040444 Gallus gallus 53.65 2.00e-52 199.00
IUUC-Gac-041735 Gasterosteus aculeatus 50.28 4.00e-38 150.00
IUUC-Gma-044332 Glycine max 37.97 4.00e-12 65.50
IUUC-Ggo-044940 Gorilla gorilla 63.84 4.00e-128 451.00
IUUC-Hsa-046424 Homo sapiens 69.58 0.00e+00 647.00
IUUC-Itr-048965 Ictidomys tridecemlineatus 70.39 0.00e+00 628.00
IUUC-Lch-050649 Latimeria chalumnae 40.66 2.00e-56 213.00
IUUC-Loc-051847 Lepisosteus oculatus 36.97 4.00e-47 182.00
IUUC-Laf-053938 Loxodonta africana 64.06 0.00e+00 644.00
IUUC-Mcc-055360 Macaca mulatta 67.31 8.00e-180 623.00
IUUC-Meu-056684 Macropus eugenii 47.82 1.00e-110 393.00
IUUC-Mtr-058007 Medicago truncatula 37.97 7.00e-12 64.70
IUUC-Mga-059699 Meleagris gallopavo 39.26 4.00e-64 239.00
IUUC-Mmr-060779 Microcebus murinus 71.10 0.00e+00 695.00
IUUC-Mdo-062225 Monodelphis domestica 51.55 2.00e-111 395.00
IUUC-Mmu-064239 Mus musculus 59.40 2.00e-140 492.00
IUUC-Mpu-066141 Mustela putorius furo 70.86 0.00e+00 685.00
IUUC-Mlu-067945 Myotis lucifugus 69.70 0.00e+00 658.00
IUUC-Nle-069769 Nomascus leucogenys 69.23 0.00e+00 652.00
IUUC-Opr-070905 Ochotona princeps 70.47 0.00e+00 697.00
IUUC-Ont-071477 Oreochromis niloticus 49.59 2.00e-33 137.00
IUUC-Oan-073531 Ornithorhynchus anatinus 42.53 1.00e-57 216.00
IUUC-Ola-086478 Oryzias latipes 50.41 5.00e-34 136.00
IUUC-Oga-088318 Otolemur garnettii 68.94 0.00e+00 640.00
IUUC-Oar-089647 Ovis aries 66.90 2.00e-179 622.00
IUUC-Ptr-090516 Pan troglodytes 69.58 0.00e+00 666.00
IUUC-Pan-092302 Papio anubis 66.67 6.00e-179 620.00
IUUC-Psi-093604 Pelodiscus sinensis 40.79 1.00e-78 287.00
IUUC-Pfo-096441 Poecilia formosa 49.15 8.00e-32 131.00
IUUC-Pab-097729 Pongo abelii 69.06 0.00e+00 649.00
IUUC-Pop-099737 Populus trichocarpa 34.88 9.00e-10 59.30
IUUC-Pca-100552 Procavia capensis 57.62 2.00e-98 353.00
IUUC-Ppe-102024 Prunus persica 39.05 2.00e-12 67.80
IUUC-Pva-102780 Pteropus vampyrus 71.43 0.00e+00 671.00
IUUC-Rno-105461 Rattus norvegicus 60.53 5.00e-151 527.00
IUUC-Sha-106809 Sarcophilus harrisii 52.60 3.00e-125 442.00
IUUC-Sly-111317 Solanum lycopersicum 37.00 7.00e-15 74.70
IUUC-Stu-112783 Solanum tuberosum 33.64 5.00e-14 72.00
IUUC-Sar-113579 Sorex araneus 57.92 3.00e-146 511.00
IUUC-Sbi-113834 Sorghum bicolor 33.00 2.00e-11 63.20
IUUC-Tgu-117187 Taeniopygia guttata 64.55 2.00e-45 175.00
IUUC-Tru-118182 Takifugu rubripes 51.72 4.00e-34 138.00
IUUC-Tsy-119217 Tarsius syrichta 52.76 1.00e-54 206.00
IUUC-Tni-120205 Tetraodon nigroviridis 54.92 1.00e-36 147.00
IUUC-Tca-121416 Theobroma cacao 35.79 6.00e-12 64.70
IUUC-Tvi-122557 Trichoderma virens 30.49 5.00e-05 42.40
IUUC-Tae-123092 Triticum aestivum 35.44 1.00e-10 60.80
IUUC-Tur-126688 Triticum urartu 34.18 1.00e-10 60.50
IUUC-Tbe-127622 Tupaia belangeri 67.48 0.00e+00 640.00
IUUC-Ttr-128988 Tursiops truncatus 71.68 0.00e+00 682.00
IUUC-Vpa-130302 Vicugna pacos 62.03 6.00e-107 381.00
IUUC-Vvi-131424 Vitis vinifera 37.35 4.00e-10 58.90
IUUC-Xtr-132196 Xenopus tropicalis 40.61 1.00e-70 260.00
Created Date 25-Jun-2017

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