iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-098890

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

WD-40 repeat family protein

Genbank Nucleotide ID

CM000349

Gene Name

POPTRDRAFT_571123; POPTR_0013s04640g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0013s04640	POPTR_0013s04640.1	POPTR_0013s04640.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.60e-27	93.5	262	292
E3 adaptor/Cullin RING/APC_C/CDC20	2.10e-124	415.8	127	432
UBD/Beta-Prp	9.70e-43	147.5	258	429

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWD 29
           gHt +v++l++  s+  l+sG++D+ i++WD
   Q: 262  GHTQEVCGLKWsaSGQQLASGGNDNLIHIWD 292
           8***********87799************** PP

E3 adaptor/Cullin RING/APC_C/CDC20

   S: 2    ekvldapelrddfylnLldWssknvlavaLgssvylwsaktgdvskladl.eekdlvtsvswieegtllavGtkkgeveiyDveekkkvrt 91
           e+ ldap+l ddfylnLldW+s+nvla+aLgs+vylw+a++g+ s+l  + +e+  +tsv+w ++g ++a+G ++++++++D ++++++rt
   Q: 127  ERTLDAPDLVDDFYLNLLDWGSSNVLAIALGSTVYLWDASDGSTSELVTVdDEDGPITSVNWAPDGRHIAIGLNNSHIQLWDSASNRQLRT 217
           689***********************************************667778*********************************** PP
   S: 92   l.tghsarvgaLsWnaevlssGsrdgeilhrdvrvkelklstlqahaqevCGlkwnedaklLasGGnDnsvsvwdassse......Plkkf 175
           l  gh +rvg+L+Wn+++l++G+ dg+i  +dvr++ + ++t+++h+qevCGlkw+ ++++LasGGnDn +++wd s+         l++ 
   Q: 218  LkGGHRSRVGSLAWNNHILTTGGMDGQIINNDVRIRSHIVETYRGHTQEVCGLKWSASGQQLASGGNDNLIHIWDRSTALsnsatqWLHRL 308
           *778***********************************************************************9876555666688999 PP
   S: 176  kehkaavkaiawsPwqkslLasGGGtaDrcikfwntltgalleeidtgsqvcsllwskkskelvsthGfaenkitlwkypslskvaelkgh 266
           ++h++avka+aw+P+q +lLasGGG  D+ ikfwnt tga+l++idtgsqvcsllw k+++el+s+hGf++n++t+wkyps+ k+ael+gh
   Q: 309  EDHTSAVKALAWCPFQGNLLASGGGGGDKSIKFWNTHTGACLNSIDTGSQVCSLLWNKNERELLSSHGFTQNQLTVWKYPSMVKMAELTGH 399
           9****************************************************************************************** PP
   S: 267  eaRvlslalspdgeaivtaagDetlrfwklfdk 299
           ++Rvl++a spdg +++taagDetlrfw++f  
   Q: 400  TSRVLYMAQSPDGCTVATAAGDETLRFWNVFGV 432
           ******************************975 PP

UBD/Beta-Prp

   S: 46   rslsgheaevtavkfspdgkilvtgseDrtikvwdls......tgkcvhtlkghedsvlslsfsp.sgdklvsGs..hdrtirvwdletgq 127
           +++ gh++ev  +k+s +g+ l++g++D++i++wd s      + + +h l+ h++ v +l+++p +g+ l+sG+   d+ i+ w+++tg 
   Q: 258  ETYRGHTQEVCGLKWSASGQQLASGGNDNLIHIWDRStalsnsATQWLHRLEDHTSAVKALAWCPfQGNLLASGGggGDKSIKFWNTHTGA 348
           5778999999999999999999999999999999666666676999999999999999999999999999999752279999999999999 PP
   S: 128  cleetlsghdgvvncvvvhpdg.nllvs.GslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdl 209
           cl+++++g +  v+++ +++++  ll s G++ +++ +W+ +++  + +ltg ht++v  ++ +++g  +++++ d t+++w++
   Q: 349  CLNSIDTGSQ--VCSLLWNKNErELLSShGFTQNQLTVWKYPSMVKMAELTG-HTSRVLYMAQSPDGCTVATAAGDETLRFWNV 429
           9999999988..9999999999655554699999999999999999999999.9999999999999999999999999999997 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MDAGSINSSS SLKAQSRFPL QQQFLPRMNS KENLDRFIPN RSAMDMDYAH FMLTEGRKGK 60
ENPTVNSPSR EAYRKQLAES LNMNRTRILA FKNKPPAPVE LMPQDHSHHH HQPKTAKPRR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTTTGCAGAA GGAAAAATCT TGTTGGGTTC CTTTATTTTT GATTAATTTT ACAGTTTCTC 60
TGTCTATTAT TTGTTTTTGG TTGTTGTTAA CATTATGGAT GCAGGGTCTA TTAACTCTTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR024977--Apc4_WD40_dom
IPR033010--Cdc20/Fizzy
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12894--ANAPC4_WD40
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0097027--F:ubiquitin-protein transferase activator activity
GO:1904668--P:positive regulation of ubiquitin protein ligase activity

KEGG

pop:POPTR_0013s04640g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000638	Aegilops tauschii	73.48	0.00e+00	670.00
IUUC-Atr-002792	Amborella trichopoda	68.78	1.00e-179	622.00
IUUC-Apl-003255	Anas platyrhynchos	46.45	5.00e-107	380.00
IUUC-Aca-004920	Anolis carolinensis	46.81	2.00e-101	362.00
IUUC-Aly-006253	Arabidopsis lyrata	83.37	0.00e+00	791.00
IUUC-Ath-006795	Arabidopsis thaliana	83.37	0.00e+00	793.00
IUUC-Bdi-014344	Brachypodium distachyon	73.61	0.00e+00	673.00
IUUC-Bol-015368	Brassica oleracea	84.49	0.00e+00	796.00
IUUC-Bra-016738	Brassica rapa	82.97	0.00e+00	795.00
IUUC-Cre-022701	Chlamydomonas reinhardtii	52.80	6.00e-121	427.00
IUUC-Cin-025675	Ciona intestinalis	48.28	4.00e-109	387.00
IUUC-Csv-026019	Ciona savignyi	47.52	4.00e-99	354.00
IUUC-Dse-031391	Dothistroma septosporum	49.06	2.00e-96	345.00
IUUC-Dme-031905	Drosophila melanogaster	46.63	1.00e-110	393.00
IUUC-Fal-037558	Ficedula albicollis	45.72	2.00e-104	372.00
IUUC-Gmo-039284	Gadus morhua	45.72	2.00e-101	362.00
IUUC-Gga-040790	Gallus gallus	46.94	7.00e-107	380.00
IUUC-Gma-043985	Glycine max	84.84	0.00e+00	766.00
IUUC-Lpe-050954	Leersia perrieri	70.91	0.00e+00	630.00
IUUC-Loc-052638	Lepisosteus oculatus	44.04	2.00e-87	315.00
IUUC-Lma-052998	Leptosphaeria maculans	46.63	2.00e-94	339.00
IUUC-Mtr-057725	Medicago truncatula	82.89	0.00e+00	746.00
IUUC-Mga-060102	Meleagris gallopavo	46.94	6.00e-107	380.00
IUUC-Mac-064861	Musa acuminata	73.57	0.00e+00	682.00
IUUC-Ont-071660	Oreochromis niloticus	46.31	2.00e-97	349.00
IUUC-Oba-075514	Oryza barthii	70.70	0.00e+00	636.00
IUUC-Obr-076018	Oryza brachyantha	71.96	0.00e+00	659.00
IUUC-Ogl-077254	Oryza glaberrima	70.91	0.00e+00	638.00
IUUC-Ogu-078562	Oryza glumaepatula	70.70	0.00e+00	637.00
IUUC-Oin-080094	Oryza indica	70.91	0.00e+00	638.00
IUUC-Olo-080449	Oryza longistaminata	70.91	0.00e+00	639.00
IUUC-Ome-081186	Oryza meridionalis	70.86	0.00e+00	654.00
IUUC-Oni-082243	Oryza nivara	70.91	0.00e+00	638.00
IUUC-Opu-084007	Oryza punctata	70.28	0.00e+00	632.00
IUUC-Oru-084357	Oryza rufipogon	70.70	0.00e+00	636.00
IUUC-Osa-086094	Oryza sativa	70.70	0.00e+00	637.00
IUUC-Ola-086907	Oryzias latipes	45.70	2.00e-97	348.00
IUUC-Olu-087647	Ostreococcus lucimarinus	56.25	6.00e-135	473.00
IUUC-Psi-093188	Pelodiscus sinensis	44.79	7.00e-104	370.00
IUUC-Pma-094187	Petromyzon marinus	45.07	1.00e-97	350.00
IUUC-Ppa-095687	Physcomitrella patens	66.67	6.00e-152	530.00
IUUC-Sce-106360	Saccharomyces cerevisiae	41.78	1.00e-80	293.00
IUUC-Spo-108075	Schizosaccharomyces pombe	43.84	3.00e-92	332.00
IUUC-Smo-108922	Selaginella moellendorffii	60.09	2.00e-153	534.00
IUUC-Sit-110032	Setaria italica	69.98	0.00e+00	659.00
IUUC-Sly-111025	Solanum lycopersicum	82.89	0.00e+00	732.00
IUUC-Stu-112676	Solanum tuberosum	83.55	0.00e+00	749.00
IUUC-Sbi-114558	Sorghum bicolor	70.76	0.00e+00	662.00
IUUC-Tgu-117100	Taeniopygia guttata	45.48	3.00e-104	371.00
IUUC-Tni-120474	Tetraodon nigroviridis	44.39	1.00e-94	339.00
IUUC-Tae-123017	Triticum aestivum	73.72	0.00e+00	672.00
IUUC-Tur-126193	Triticum urartu	73.21	0.00e+00	671.00
IUUC-Vpa-130775	Vicugna pacos	37.63	3.00e-54	205.00
IUUC-Vvi-131245	Vitis vinifera	83.37	0.00e+00	718.00
IUUC-Xtr-131993	Xenopus tropicalis	47.61	4.00e-108	384.00
IUUC-Zma-135456	Zea mays	69.49	0.00e+00	658.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence