iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-099061

Ensembl Protein ID

POPTR_0015s01190.1

UniProt Accession

B9IDM7; B9IDM7_POPTR

Genbank Protein ID

EEF05514.2

Protein Name

PHD finger family protein

Genbank Nucleotide ID

CM000351

Gene Name

POPTR_0015s01190g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0015s01190	POPTR_0015s01190.1	POPTR_0015s01190.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	3.30e-08	34.7	28	74

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 7    Cgeggedek..slveCekCrewfHpaClklsveeelpnsekwiCpkCrs 53
           C+e+g++e+  +l+ C+kC++ fH  Cl +    ++p+ + w+Cp+C++
   Q: 28   CEECGSGESpgELLLCDKCDKGFHLFCLRPI-LVSVPKGS-WFCPSCSK 74
           555555555558******************9.*******8.******86 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MALRSKRSQA PKPIFRSKHA DDYSGVYCEE CGSGESPGEL LLCDKCDKGF HLFCLRPILV 60
SVPKGSWFCP SCSKQKMPKS FPLVQTKIID FFRIKRSTES TQKLSQGKQK ILGCGFKKRK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCACTGA GAAGCAAGAG AAGCCAGGCT CCAAAGCCGA TATTTAGATC CAAGCATGCT 60
GACGATTACA GTGGAGTTTA CTGTGAAGAA TGCGGGTCAG GAGAGTCACC AGGAGAGCTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001214--SET_dom
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50280--SET
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF00628--PHD
PF00856--SET

SMART

SM00249--PHD

Gene Ontology

GO:0008270--F:zinc ion binding

KEGG

pop:POPTR_0015s01190g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002113	Ailuropoda melanoleuca	53.33	3.00e-11	64.30
IUUC-Atr-002978	Amborella trichopoda	67.58	6.00e-109	386.00
IUUC-Apl-003454	Anas platyrhynchos	51.11	4.00e-11	63.90
IUUC-Aca-004951	Anolis carolinensis	51.11	9.00e-11	62.80
IUUC-Acl-008162	Aspergillus clavatus	50.00	2.00e-10	62.00
IUUC-Afl-008625	Aspergillus flavus	38.71	2.00e-10	61.60
IUUC-Afu-008796	Aspergillus fumigatus	45.83	2.00e-09	58.90
IUUC-Ani-009139	Aspergillus nidulans	47.92	2.00e-10	62.00
IUUC-Aor-010155	Aspergillus oryzae	38.71	2.00e-10	61.60
IUUC-Ate-010453	Aspergillus terreus	40.32	1.00e-09	59.70
IUUC-Ame-011469	Astyanax mexicanus	63.64	6.00e-11	63.50
IUUC-Bta-012408	Bos taurus	53.33	3.00e-11	64.30
IUUC-Bci-013992	Botrytis cinerea	42.22	4.00e-08	54.30
IUUC-Bdi-014900	Brachypodium distachyon	70.29	7.00e-118	416.00
IUUC-Cel-018523	Caenorhabditis elegans	41.18	5.00e-08	53.90
IUUC-Cja-019194	Callithrix jacchus	53.33	2.00e-11	65.10
IUUC-Cfa-021083	Canis familiaris	53.33	4.00e-11	64.30
IUUC-Cpo-021422	Cavia porcellus	53.33	3.00e-11	64.30
IUUC-Csa-023848	Chlorocebus sabaeus	53.33	4.00e-11	64.30
IUUC-Cho-024914	Choloepus hoffmanni	51.11	3.00e-10	61.20
IUUC-Csv-026068	Ciona savignyi	51.11	8.00e-11	59.30
IUUC-Cgl-026613	Colletotrichum gloeosporioides	43.75	1.00e-08	55.80
IUUC-Dre-027895	Danio rerio	51.11	3.00e-11	64.70
IUUC-Dno-029686	Dasypus novemcinctus	53.33	4.00e-11	63.90
IUUC-Dor-030625	Dipodomys ordii	53.33	4.00e-11	63.90
IUUC-Dse-031479	Dothistroma septosporum	39.58	1.00e-07	52.80
IUUC-Ete-032702	Echinops telfairi	53.33	4.00e-11	64.30
IUUC-Eca-033647	Equus caballus	53.33	3.00e-11	64.70
IUUC-Eeu-034626	Erinaceus europaeus	53.33	4.00e-11	63.90
IUUC-Fca-036092	Felis catus	53.33	3.00e-11	64.30
IUUC-Fal-037127	Ficedula albicollis	51.11	5.00e-11	63.50
IUUC-Gmo-039455	Gadus morhua	51.11	5.00e-11	63.50
IUUC-Gga-041120	Gallus gallus	51.11	7.00e-11	63.50
IUUC-Gac-041873	Gasterosteus aculeatus	51.11	3.00e-11	64.30
IUUC-Gma-044242	Glycine max	66.67	1.00e-31	127.00
IUUC-Ggo-045317	Gorilla gorilla	53.33	3.00e-11	64.30
IUUC-Hsa-046773	Homo sapiens	53.33	3.00e-11	64.30
IUUC-Itr-049026	Ictidomys tridecemlineatus	53.33	3.00e-11	64.70
IUUC-Lch-050271	Latimeria chalumnae	51.11	3.00e-11	64.30
IUUC-Lpe-051351	Leersia perrieri	69.58	1.00e-127	448.00
IUUC-Loc-052699	Lepisosteus oculatus	53.33	1.00e-11	65.90
IUUC-Laf-054049	Loxodonta africana	48.89	3.00e-09	57.80
IUUC-Mcc-055171	Macaca mulatta	53.33	4.00e-11	64.30
IUUC-Meu-055990	Macropus eugenii	51.11	6.00e-11	63.20
IUUC-Mtr-057790	Medicago truncatula	71.97	1.00e-129	455.00
IUUC-Mga-059913	Meleagris gallopavo	51.11	5.00e-11	63.50
IUUC-Mmr-061681	Microcebus murinus	53.33	3.00e-11	64.30
IUUC-Mdo-062486	Monodelphis domestica	51.11	8.00e-11	63.20
IUUC-Mmu-063460	Mus musculus	53.33	5.00e-11	63.50
IUUC-Mpu-066324	Mustela putorius furo	53.33	3.00e-11	64.30
IUUC-Mlu-067334	Myotis lucifugus	53.33	3.00e-11	64.30
IUUC-Nfi-068430	Neosartorya fischeri	45.83	2.00e-09	58.90
IUUC-Nle-069983	Nomascus leucogenys	53.33	3.00e-11	64.30
IUUC-Opr-070678	Ochotona princeps	53.33	2.00e-11	64.70
IUUC-Ont-071565	Oreochromis niloticus	53.33	4.00e-11	63.90
IUUC-Oan-073582	Ornithorhynchus anatinus	51.11	4.00e-10	60.80
IUUC-Ocu-074779	Oryctolagus cuniculus	53.33	3.00e-11	64.30
IUUC-Oba-075648	Oryza barthii	59.71	4.00e-120	424.00
IUUC-Obr-076539	Oryza brachyantha	62.62	2.00e-117	414.00
IUUC-Ogl-076971	Oryza glaberrima	60.00	1.00e-120	426.00
IUUC-Ogu-078790	Oryza glumaepatula	60.00	7.00e-121	426.00
IUUC-Oin-079240	Oryza indica	60.00	1.00e-120	425.00
IUUC-Ome-081195	Oryza meridionalis	59.71	1.00e-120	426.00
IUUC-Oni-082728	Oryza nivara	60.00	1.00e-120	426.00
IUUC-Opu-083473	Oryza punctata	62.04	2.00e-120	424.00
IUUC-Oru-084688	Oryza rufipogon	60.00	1.00e-120	426.00
IUUC-Ola-086746	Oryzias latipes	51.11	6.00e-11	63.50
IUUC-Oga-088475	Otolemur garnettii	53.33	4.00e-11	63.90
IUUC-Oar-090191	Ovis aries	53.33	4.00e-11	64.30
IUUC-Ptr-090963	Pan troglodytes	53.33	3.00e-11	64.30
IUUC-Pan-091819	Papio anubis	53.33	3.00e-11	64.30
IUUC-Psi-092932	Pelodiscus sinensis	48.89	5.00e-11	63.90
IUUC-Pno-094879	Phaeosphaeria nodorum	47.62	1.00e-07	52.40
IUUC-Pfo-096939	Poecilia formosa	51.11	5.00e-11	63.50
IUUC-Pab-098679	Pongo abelii	53.33	3.00e-11	64.30
IUUC-Pva-102969	Pteropus vampyrus	53.33	3.00e-11	64.30
IUUC-Pgr-103434	Puccinia graminis	54.90	5.00e-14	71.60
IUUC-Pte-104195	Pyrenophora teres	43.86	4.00e-12	67.40
IUUC-Pyt-104566	Pyrenophora triticirepentis	43.86	4.00e-12	67.80
IUUC-Rno-104927	Rattus norvegicus	53.33	4.00e-11	63.90
IUUC-Sce-106207	Saccharomyces cerevisiae	46.67	6.00e-09	55.50
IUUC-Sha-107021	Sarcophilus harrisii	51.11	7.00e-11	63.20
IUUC-Sja-107970	Schizosaccharomyces japonicus	47.92	1.00e-10	62.00
IUUC-Spo-108283	Schizosaccharomyces pombe	45.83	2.00e-09	58.50
IUUC-Ssl-108489	Sclerotinia sclerotiorum	41.67	3.00e-08	55.10
IUUC-Sit-109938	Setaria italica	69.12	8.00e-125	439.00
IUUC-Sly-111298	Solanum lycopersicum	53.33	2.00e-10	62.40
IUUC-Sar-113192	Sorex araneus	46.67	1.00e-09	59.30
IUUC-Sbi-114173	Sorghum bicolor	66.57	1.00e-125	442.00
IUUC-Sre-115161	Sporisorium reilianum	44.44	2.00e-12	68.90
IUUC-Ssc-116243	Sus scrofa	53.33	2.00e-11	65.10
IUUC-Tgu-117073	Taeniopygia guttata	51.11	4.00e-11	63.90
IUUC-Tru-118124	Takifugu rubripes	51.11	2.00e-09	58.20
IUUC-Tsy-119386	Tarsius syrichta	48.89	4.00e-10	60.80
IUUC-Tca-120995	Theobroma cacao	74.07	4.00e-155	540.00
IUUC-Tvi-122263	Trichoderma virens	46.94	5.00e-09	57.00
IUUC-Tae-124910	Triticum aestivum	67.44	4.00e-119	420.00
IUUC-Tbe-127890	Tupaia belangeri	53.85	6.00e-11	63.50
IUUC-Ttr-128885	Tursiops truncatus	53.33	4.00e-11	63.90
IUUC-Uma-129590	Ustilago maydis	53.33	1.00e-12	69.30
IUUC-Vpa-130046	Vicugna pacos	46.67	9.00e-10	59.70
IUUC-Vvi-131714	Vitis vinifera	78.29	8.00e-139	486.00
IUUC-Xtr-131812	Xenopus tropicalis	54.17	1.00e-12	68.90
IUUC-Xma-133560	Xiphophorus maculatus	51.11	5.00e-11	63.50

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence