iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007304

UUCD1 version

UUC-ArT-00111

Ensembl Protein ID

AT1G21650.3

UniProt Accession

D8WUA4; F4HY37; Q9XI14; SECA2_ARATH

Genbank Protein ID

ADI56650.1; AAD41417.1; AEE30132.1; AEE30134.1

Protein Name

Protein translocase subunit SECA2, chloroplastic

Genbank Nucleotide ID

GU289737; AC007727; CP002684; CP002684

Gene Name

SECA2; At1g21650; F8K7.6

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT1G21650	AT1G21650.2	AT1G21650.2
AT1G21650	AT1G21650.1	AT1G21650.1
AT1G21650	AT1G21650.3	AT1G21650.3

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.40e-16	59.6	522	558

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclafsd.tllvsGsdDgtikvWDlrtgvllk 37
           gH+dsvt+la  + ++l s+s+D ti +W+l+++  ++
   Q: 522  GHQDSVTGLAV-GgGFLFSSSYDRTILIWSLKDFSHVH 558
           8*********9.449****************9987665 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Involved in protein export. Probably interacts with other proteins to allow the postimport or conservative sorting pathway for inner membrane proteins in plastids. May have a central role in coupling the hydrolysis of ATP to the transfer of proteins across the membrane.

Protein Sequence
(Fasta)

MEEPECPVCL QSYDGESTVP RVLACGHTAC EECLTNLPKK FPDTIRCPAC TVLVKFPPQG 60
PSALPKNIDL LRLFPSISKL KLEPGRNFEK VVEFVTRSWS DDFYATWKDR ILVHDAVSVE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTAAATGTTG TTTTAGTTAA AGTCTAAAAC GTCGTCGGAT TAACTCAGTT GTTCGTCGCA 60
TCGAATCATC GGAGGTGATG GAGGAACCGG AGTGTCCGGT GTGTCTACAG TCTTACGACG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0025--Alternative splicing
KW-0067--ATP-binding
KW-0150--Chloroplast
KW-0181--Complete proteome
KW-0472--Membrane
KW-0547--Nucleotide-binding
KW-0934--Plastid
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0809--Transit peptide
KW-0811--Translocation
KW-0813--Transport

Interpro

IPR027417--P-loop_NTPase
IPR000185--SecA
IPR020937--SecA_CS
IPR011115--SecA_DEAD
IPR014018--SecA_motor_DEAD
IPR011130--SecA_preprotein_X-link_dom
IPR011116--SecA_Wing/Scaffold

PROSITE

PS01312--SECA
PS51196--SECA_MOTOR_DEAD

Pfam

PF07517--SecA_DEAD
PF01043--SecA_PP_bind
PF07516--SecA_SW

PRINTS

PR00906--SECA

SMART

SM00957--SecA_DEAD
SM00958--SecA_PP_bind

Gene Ontology

GO:0031969--C:chloroplast membrane
GO:0005524--F:ATP binding
GO:0015462--F:ATPase-coupled protein transmembrane transporter activity
GO:0009658--P:chloroplast organization
GO:0017038--P:protein import
GO:0006605--P:protein targeting
GO:0010109--P:regulation of photosynthesis

KEGG

ath:AT1G21650

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003105	Amborella trichopoda	37.38	7.00e-135	474.00
IUUC-Aly-006480	Arabidopsis lyrata	89.09	0.00e+00	2938.00
IUUC-Bol-015912	Brassica oleracea	72.55	0.00e+00	1119.00
IUUC-Bra-017564	Brassica rapa	73.72	0.00e+00	1193.00
IUUC-Gma-043879	Glycine max	42.57	0.00e+00	634.00
IUUC-Lpe-051223	Leersia perrieri	34.13	2.00e-94	340.00
IUUC-Oin-079822	Oryza indica	36.25	4.00e-105	375.00
IUUC-Olo-080336	Oryza longistaminata	44.50	1.00e-98	353.00
IUUC-Ppa-095665	Physcomitrella patens	37.76	9.00e-53	201.00
IUUC-Smo-109481	Selaginella moellendorffii	39.24	4.00e-49	189.00
IUUC-Stu-112296	Solanum tuberosum	40.60	2.00e-171	595.00
IUUC-Vvi-130947	Vitis vinifera	47.50	0.00e+00	751.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence