iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sly-111596

Ensembl Protein ID

Solyc10g006960.1.1

UniProt Accession

K4CXM6; K4CXM6_SOLLC

Protein Name

Uncharacterized protein

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Solyc10g006960.1	Solyc10g006960.1.1	Solyc10g006960.1.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	2.20e-08	34.8	8	71
E3 activity/RING/RING	8.80e-09	36.5	13	60

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 3    peeflCpIslelMrdPvvlpsGitydrssIekwlasggk........tcPvtrqplteedlvPn 58
            e f C I l+  +dPvv+ +G+ y   +I kw++  ++        tcPv+++++++++lvP 
   Q: 8    MECFDCNICLDSAHDPVVTLCGHLYCWPCIYKWIQVENSapgseetpTCPVCKSHISNSSLVPL 71
           689*******************************888888899999****************96 PP

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkw...pglknssskefrCPlCr 46
           C iCl++  d p+v+ CgH+++  C++kw    ++   s  + +CP+C+
   Q: 13   CNICLDSAHD-PVVTLCGHLYCWPCIYKWiqvENSAPGSEETPTCPVCK 60
           99********.9999**************888666667888889****6 PP

Organism

Solanum lycopersicum

Protein Sequence
(Fasta)

MANAGNLMEC FDCNICLDSA HDPVVTLCGH LYCWPCIYKW IQVENSAPGS EETPTCPVCK 60
SHISNSSLVP LYGRGTSSEE CRSNEAQVDV VVPHRPQAIW TTATQVNTSS PPSSHVHQQL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCAAACG CTGGAAATCT GATGGAATGT TTTGATTGCA ACATTTGTCT TGATTCTGCA 60
CATGATCCTG TTGTCACTCT CTGCGGTCAC TTATACTGCT GGCCTTGCAT TTACAAGTGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR018957--Znf_C3HC4_RING-type
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00097--zf-C3HC4

SMART

SM00184--RING

Gene Ontology

GO:0036513--C:Derlin-1 retrotranslocation complex
GO:0016021--C:integral component of membrane
GO:1904264--F:ubiquitin protein ligase activity involved in ERAD pathway
GO:0044390--F:ubiquitin-like protein conjugating enzyme binding
GO:0008270--F:zinc ion binding
GO:0071712--P:ER-associated misfolded protein catabolic process
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Gma-044283	Glycine max	47.85	1.00e-50	191.00
IUUC-Stu-112089	Solanum tuberosum	93.09	2.00e-108	384.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence