iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSPSIG00000007362.1	ENSPSIT00000008247.1	ENSPSIP00000008204.1
ENSPSIG00000007362.1	ENSPSIT00000008250.1	ENSPSIP00000008207.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.40e-06	27.3	102	133

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlr 31
           H++++t +++ ++ t+lvsG   g + +W+l+
   Q: 102  HNAEITVINWsTNgTRLVSGDKLGGLVLWRLD 133
           99********9556****************86 PP

Organism

Pelodiscus sinensis

Protein Sequence
(Fasta)

MAVYVDHRLE APDSAGSPSY ITWHPLHPLL AVASISSTSG GSVDIYLEQG EHVPDLHTER 60
NFPATSLSWH PSRLILAVGW ETGEVVVLNK QDKEYHTVPP NHNAEITVIN WSTNGTRLVS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGTCTGGACG CCACCTAAGA CTGTGTATAT CACTATGGCT GTGTATGTTG ATCACAGACT 60
AGAAGCCCCT GATTCAGCTG GGTCCCCTTC TTACATAACT TGGCATCCTC TTCATCCACT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR024977--Apc4_WD40_dom
IPR011044--Quino_amine_DH_bsu
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12894--ANAPC4_WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005930--C:axoneme
GO:0005813--C:centrosome
GO:0036064--C:ciliary basal body
GO:0030991--C:intraciliary transport particle A
GO:0032391--C:photoreceptor connecting cilium
GO:0001750--C:photoreceptor outer segment
GO:0007368--P:determination of left/right symmetry
GO:1990403--P:embryonic brain development
GO:0031076--P:embryonic camera-type eye development
GO:0048701--P:embryonic cranial skeleton morphogenesis
GO:0042733--P:embryonic digit morphogenesis
GO:0007507--P:heart development
GO:0035721--P:intraciliary retrograde transport
GO:0021532--P:neural tube patterning
GO:1905515--P:non-motile cilium assembly
GO:0035845--P:photoreceptor cell outer segment organization
GO:0061512--P:protein localization to cilium
GO:1902017--P:regulation of cilium assembly
GO:0008589--P:regulation of smoothened signaling pathway
GO:0072001--P:renal system development
GO:0060041--P:retina development in camera-type eye

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001534	Ailuropoda melanoleuca	74.71	0.00e+00	2227.00
IUUC-Apl-004045	Anas platyrhynchos	76.88	0.00e+00	1288.00
IUUC-Aca-004856	Anolis carolinensis	78.70	0.00e+00	2354.00
IUUC-Bta-013342	Bos taurus	72.28	0.00e+00	2103.00
IUUC-Cel-018591	Caenorhabditis elegans	23.11	4.00e-08	54.30
IUUC-Cja-019368	Callithrix jacchus	69.55	0.00e+00	720.00
IUUC-Cre-022796	Chlamydomonas reinhardtii	34.51	0.00e+00	773.00
IUUC-Csa-023417	Chlorocebus sabaeus	73.62	0.00e+00	2152.00
IUUC-Cin-025150	Ciona intestinalis	48.86	0.00e+00	1437.00
IUUC-Csv-025810	Ciona savignyi	33.33	2.00e-94	338.00
IUUC-Dre-027680	Danio rerio	60.93	0.00e+00	1810.00
IUUC-Eca-033444	Equus caballus	76.98	0.00e+00	2349.00
IUUC-Fca-036025	Felis catus	74.08	0.00e+00	2211.00
IUUC-Gmo-038491	Gadus morhua	61.90	0.00e+00	1746.00
IUUC-Gac-041476	Gasterosteus aculeatus	22.25	3.00e-09	58.20
IUUC-Loc-052740	Lepisosteus oculatus	68.63	0.00e+00	2073.00
IUUC-Mga-060030	Meleagris gallopavo	20.71	1.00e-10	62.80
IUUC-Mpu-065874	Mustela putorius furo	74.93	0.00e+00	2239.00
IUUC-Mlu-067077	Myotis lucifugus	75.26	0.00e+00	2260.00
IUUC-Ont-072303	Oreochromis niloticus	61.21	0.00e+00	1775.00
IUUC-Ola-086338	Oryzias latipes	58.61	0.00e+00	1693.00
IUUC-Ptr-090583	Pan troglodytes	72.72	0.00e+00	2172.00
IUUC-Pan-092689	Papio anubis	73.69	0.00e+00	2152.00
IUUC-Pma-094497	Petromyzon marinus	62.15	0.00e+00	1878.00
IUUC-Pfo-096612	Poecilia formosa	59.79	0.00e+00	1704.00
IUUC-Pva-102236	Pteropus vampyrus	84.44	0.00e+00	1259.00
IUUC-Sha-106814	Sarcophilus harrisii	79.64	0.00e+00	2391.00
IUUC-Tru-118007	Takifugu rubripes	59.25	0.00e+00	1768.00
IUUC-Ttr-128400	Tursiops truncatus	71.74	0.00e+00	1997.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence