iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

mRNA Expression
GEO
DNA & RNA Element
microRNA	RAID2
Protein-protein Interaction
IID
Post-translational Modifications (PTMs)
dbPAF
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.10e-06	29.0	331	368

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           H + v ++a  +  +++++ + D ++++WD+r +++l+
   Q: 331  HLSAVKGIAVdDQgNYMATTGLDRKCRIWDVRMFRQLH 368
           9999******7336******************999886 PP

Organism

Caenorhabditis elegans

Protein Sequence
(Fasta)

MPPIKRSKPD GGVKKISITA TDVTPAKGVE EKMSWKEYKK MKQHTGGGTR NKLKKKQRPP 60
TENTEGRAKK PKVLTKEQLE RHDTGADQID PSSMRSKLQQ EKMKVTKDKF QRRIEATAKA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TAATGCCGCC AATCAAAAGA TCCAAGCCAG ATGGTGGAGT CAAGAAAATC TCGATCACGG 60
CTACCGATGT CACACCTGCA AAGGGTGTGG AGGAGAAAAT GAGCTGGAAA GAGTATAAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR012952--BING4_C_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08149--BING4CT
PF00400--WD40

SMART

SM01033--BING4CT
SM00320--WD40

Gene Ontology

GO:0030686--C:90S preribosome
GO:0005730--C:nucleolus
GO:0032040--C:small-subunit processome
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

cel:CELE_F28D1.1

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000921	Aegilops tauschii	42.45	3.00e-85	308.00
IUUC-Atr-002528	Amborella trichopoda	39.00	2.00e-86	311.00
IUUC-Aly-005663	Arabidopsis lyrata	41.90	8.00e-89	319.00
IUUC-Ath-007405	Arabidopsis thaliana	38.75	4.00e-88	317.00
IUUC-Ang-009764	Aspergillus niger	44.79	3.00e-108	384.00
IUUC-Ame-011572	Astyanax mexicanus	45.86	3.00e-117	414.00
IUUC-Bdi-014459	Brachypodium distachyon	42.97	2.00e-86	311.00
IUUC-Bol-015965	Brassica oleracea	40.31	1.00e-89	322.00
IUUC-Bra-016837	Brassica rapa	39.78	2.00e-87	314.00
IUUC-Cre-022704	Chlamydomonas reinhardtii	39.71	3.00e-100	357.00
IUUC-Cgl-026438	Colletotrichum gloeosporioides	42.14	5.00e-102	363.00
IUUC-Cne-026784	Cryptococcus neoformans	35.13	2.00e-71	261.00
IUUC-Dre-028533	Danio rerio	42.96	4.00e-115	407.00
IUUC-Dse-031280	Dothistroma septosporum	40.24	4.00e-91	327.00
IUUC-Eeu-034982	Erinaceus europaeus	47.16	3.00e-68	251.00
IUUC-Fox-037980	Fusarium oxysporum	42.61	3.00e-98	351.00
IUUC-Fso-038154	Fusarium solani	42.55	9.00e-99	352.00
IUUC-Gmo-039548	Gadus morhua	46.93	1.00e-121	428.00
IUUC-Ggr-039976	Gaeumannomyces graminis	39.57	4.00e-101	360.00
IUUC-Gac-042249	Gasterosteus aculeatus	49.32	1.00e-122	432.00
IUUC-Gma-043274	Glycine max	43.66	7.00e-89	320.00
IUUC-Hvu-047436	Hordeum vulgare	43.73	9.00e-63	232.00
IUUC-Kpa-049329	Komagataella pastoris	44.35	5.00e-99	353.00
IUUC-Lpe-051501	Leersia perrieri	42.51	4.00e-85	310.00
IUUC-Loc-051736	Lepisosteus oculatus	48.23	3.00e-118	417.00
IUUC-Meu-056419	Macropus eugenii	52.89	2.00e-102	364.00
IUUC-Mor-057146	Magnaporthe oryzae	41.76	5.00e-99	353.00
IUUC-Mpo-057512	Magnaporthe poae	39.18	3.00e-103	367.00
IUUC-Mtr-058139	Medicago truncatula	41.79	8.00e-93	333.00
IUUC-Mla-059028	Melampsora laricipopulina	42.06	3.00e-84	304.00
IUUC-Mvi-060533	Microbotryum violaceum	42.49	9.00e-89	319.00
IUUC-Mac-065643	Musa acuminata	42.05	1.00e-87	315.00
IUUC-Ont-071977	Oreochromis niloticus	47.75	1.00e-119	422.00
IUUC-Oba-075525	Oryza barthii	42.75	4.00e-92	330.00
IUUC-Obr-076468	Oryza brachyantha	42.26	2.00e-90	325.00
IUUC-Ogl-077395	Oryza glaberrima	42.75	4.00e-92	330.00
IUUC-Ogu-078730	Oryza glumaepatula	42.75	7.00e-92	330.00
IUUC-Oin-079797	Oryza indica	42.75	4.00e-92	330.00
IUUC-Olo-080539	Oryza longistaminata	42.51	2.00e-91	328.00
IUUC-Oni-082635	Oryza nivara	42.75	5.00e-92	330.00
IUUC-Opu-083733	Oryza punctata	42.75	4.00e-93	333.00
IUUC-Oru-084560	Oryza rufipogon	42.75	4.00e-92	330.00
IUUC-Osa-085463	Oryza sativa	42.75	4.00e-92	330.00
IUUC-Ola-086667	Oryzias latipes	52.18	9.00e-127	446.00
IUUC-Olu-087881	Ostreococcus lucimarinus	42.97	3.00e-91	328.00
IUUC-Pma-094742	Petromyzon marinus	51.37	2.00e-106	378.00
IUUC-Ppa-095230	Physcomitrella patens	42.61	1.00e-94	338.00
IUUC-Pop-099756	Populus trichocarpa	42.20	2.00e-87	314.00
IUUC-Ppe-101354	Prunus persica	41.79	1.00e-87	315.00
IUUC-Pte-104146	Pyrenophora teres	38.77	3.00e-92	331.00
IUUC-Pyt-104559	Pyrenophora triticirepentis	38.33	5.00e-92	330.00
IUUC-Sce-106227	Saccharomyces cerevisiae	43.03	2.00e-98	351.00
IUUC-Sja-107925	Schizosaccharomyces japonicus	38.24	4.00e-98	350.00
IUUC-Spo-108359	Schizosaccharomyces pombe	43.73	3.00e-97	347.00
IUUC-Smo-108814	Selaginella moellendorffii	43.85	6.00e-102	363.00
IUUC-Sit-110158	Setaria italica	42.82	7.00e-85	306.00
IUUC-Sly-111569	Solanum lycopersicum	43.66	9.00e-86	309.00
IUUC-Stu-112403	Solanum tuberosum	43.66	1.00e-86	312.00
IUUC-Sbi-113839	Sorghum bicolor	45.32	3.00e-89	321.00
IUUC-Sre-115150	Sporisorium reilianum	40.66	1.00e-91	329.00
IUUC-Tru-118535	Takifugu rubripes	51.12	5.00e-124	436.00
IUUC-Tca-121165	Theobroma cacao	40.79	5.00e-87	313.00
IUUC-Tre-122114	Trichoderma reesei	38.91	7.00e-101	359.00
IUUC-Tvi-122437	Trichoderma virens	40.52	6.00e-100	356.00
IUUC-Tae-123887	Triticum aestivum	42.93	2.00e-82	298.00
IUUC-Tur-126078	Triticum urartu	43.49	1.00e-80	292.00
IUUC-Tme-127208	Tuber melanosporum	46.87	3.00e-104	370.00
IUUC-Ttr-129047	Tursiops truncatus	43.23	1.00e-113	402.00
IUUC-Uma-129320	Ustilago maydis	44.82	3.00e-92	331.00
IUUC-Vda-129926	Verticillium dahliae	39.53	1.00e-104	372.00
IUUC-Vvi-131643	Vitis vinifera	40.56	2.00e-82	298.00
IUUC-Yli-134674	Yarrowia lipolytica	42.40	9.00e-100	355.00
IUUC-Zma-135903	Zea mays	44.05	2.00e-81	294.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence