iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
circBase	microRNA	miRNAMap	RAID2
Protein-protein Interaction
IID	Mentha
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.40e-16	58.1	89	123

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtg 33
           gH+ +vt++af sd + +vs s+D ++ +WD+r++
   Q: 89   GHKKEVTDVAFaSDgKKFVSISGDRSVILWDVRDF 123
           8***********999*****************987 PP

Organism

Caenorhabditis elegans

Protein Sequence
(Fasta)

MIDIDSVSLP ILIGGLVGFV TVMGVAIIYV AKKEQQGEQE EVDVVMDEVT ETIISEEPVK 60
KNKHQRTNDQ WKAKEPTFVH PWNVSVLKGH KKEVTDVAFA SDGKKFVSIS GDRSVILWDV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATTAAACCAT GATTGACATC GATAGTGTCA GTCTACCAAT TCTGATCGGG GGATTAGTTG 60
GCTTTGTCAC TGTGATGGGA GTAGCAATAA TCTACGTAGC AAAGAAGGAG CAACAAGGAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0472--Membrane
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0016021--C:integral component of membrane

KEGG

cel:CELE_F46C5.9

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000109	Aegilops tauschii	31.16	5.00e-16	76.30
IUUC-Aml-002212	Ailuropoda melanoleuca	30.56	2.00e-56	211.00
IUUC-Atr-002903	Amborella trichopoda	26.05	1.00e-24	105.00
IUUC-Apl-003635	Anas platyrhynchos	32.70	2.00e-61	228.00
IUUC-Aca-004472	Anolis carolinensis	31.71	1.00e-59	222.00
IUUC-Aly-005761	Arabidopsis lyrata	26.36	6.00e-27	113.00
IUUC-Ath-007476	Arabidopsis thaliana	24.93	2.00e-28	118.00
IUUC-Ame-011221	Astyanax mexicanus	34.36	3.00e-61	227.00
IUUC-Bta-013186	Bos taurus	31.32	2.00e-56	211.00
IUUC-Bdi-014298	Brachypodium distachyon	25.14	1.00e-23	102.00
IUUC-Bol-015192	Brassica oleracea	26.14	3.00e-28	118.00
IUUC-Bra-017078	Brassica rapa	26.14	7.00e-28	116.00
IUUC-Cja-018909	Callithrix jacchus	30.26	2.00e-52	198.00
IUUC-Cfa-020970	Canis familiaris	30.62	5.00e-56	210.00
IUUC-Cpo-022215	Cavia porcellus	32.34	3.00e-56	211.00
IUUC-Cre-022949	Chlamydomonas reinhardtii	32.64	4.00e-15	72.80
IUUC-Csa-023530	Chlorocebus sabaeus	30.16	2.00e-61	228.00
IUUC-Cho-024598	Choloepus hoffmanni	32.49	2.00e-36	145.00
IUUC-Cin-025486	Ciona intestinalis	32.03	1.00e-59	222.00
IUUC-Csv-025930	Ciona savignyi	29.90	4.00e-47	180.00
IUUC-Dre-027507	Danio rerio	34.23	6.00e-65	239.00
IUUC-Dno-029726	Dasypus novemcinctus	30.48	2.00e-58	218.00
IUUC-Dor-030501	Dipodomys ordii	28.81	3.00e-45	174.00
IUUC-Ete-032794	Echinops telfairi	34.89	9.00e-40	155.00
IUUC-Eca-033982	Equus caballus	31.30	3.00e-55	207.00
IUUC-Eeu-035090	Erinaceus europaeus	31.15	6.00e-37	147.00
IUUC-Fca-035944	Felis catus	31.44	3.00e-57	214.00
IUUC-Fal-036992	Ficedula albicollis	33.33	1.00e-59	223.00
IUUC-Gmo-038710	Gadus morhua	35.68	3.00e-69	254.00
IUUC-Gga-040885	Gallus gallus	31.80	1.00e-42	165.00
IUUC-Gac-041922	Gasterosteus aculeatus	34.09	5.00e-68	250.00
IUUC-Gma-043534	Glycine max	26.89	1.00e-25	109.00
IUUC-Ggo-045172	Gorilla gorilla	30.16	3.00e-58	218.00
IUUC-Hsa-045711	Homo sapiens	30.69	6.00e-59	219.00
IUUC-Itr-048196	Ictidomys tridecemlineatus	31.87	2.00e-57	215.00
IUUC-Lch-049739	Latimeria chalumnae	34.05	7.00e-66	243.00
IUUC-Lpe-050795	Leersia perrieri	22.83	3.00e-11	61.60
IUUC-Loc-052113	Lepisosteus oculatus	34.27	6.00e-60	223.00
IUUC-Laf-053751	Loxodonta africana	31.44	8.00e-57	213.00
IUUC-Mcc-055022	Macaca mulatta	30.24	1.00e-61	229.00
IUUC-Meu-056003	Macropus eugenii	30.11	4.00e-57	214.00
IUUC-Mtr-058500	Medicago truncatula	28.20	2.00e-26	111.00
IUUC-Mga-059278	Meleagris gallopavo	31.15	2.00e-44	171.00
IUUC-Mmr-061148	Microcebus murinus	30.15	3.00e-57	214.00
IUUC-Mdo-063002	Monodelphis domestica	30.43	5.00e-50	190.00
IUUC-Mmu-063607	Mus musculus	32.94	5.00e-59	220.00
IUUC-Mac-065359	Musa acuminata	24.54	8.00e-25	107.00
IUUC-Mpu-066323	Mustela putorius furo	31.82	4.00e-51	193.00
IUUC-Mlu-067946	Myotis lucifugus	31.05	4.00e-56	210.00
IUUC-Nle-069019	Nomascus leucogenys	30.42	2.00e-58	218.00
IUUC-Opr-071047	Ochotona princeps	31.56	9.00e-57	213.00
IUUC-Ont-071694	Oreochromis niloticus	35.95	8.00e-66	243.00
IUUC-Oan-073474	Ornithorhynchus anatinus	36.00	3.00e-21	95.10
IUUC-Ocu-074493	Oryctolagus cuniculus	33.33	3.00e-56	211.00
IUUC-Oba-075468	Oryza barthii	25.00	9.00e-20	90.10
IUUC-Obr-076681	Oryza brachyantha	25.65	4.00e-21	94.40
IUUC-Ogl-077870	Oryza glaberrima	25.00	9.00e-20	90.10
IUUC-Ogu-078536	Oryza glumaepatula	25.00	8.00e-20	90.10
IUUC-Oin-080175	Oryza indica	25.00	9.00e-20	90.10
IUUC-Olo-080796	Oryza longistaminata	26.38	2.00e-20	92.40
IUUC-Oni-082076	Oryza nivara	25.00	9.00e-20	90.10
IUUC-Opu-083267	Oryza punctata	25.77	7.00e-21	93.60
IUUC-Oru-084553	Oryza rufipogon	25.00	2.00e-19	89.00
IUUC-Osa-085389	Oryza sativa	25.00	9.00e-20	90.10
IUUC-Ola-086414	Oryzias latipes	35.14	2.00e-67	248.00
IUUC-Oga-088656	Otolemur garnettii	30.57	8.00e-57	213.00
IUUC-Oar-089719	Ovis aries	31.25	2.00e-56	211.00
IUUC-Ptr-091087	Pan troglodytes	30.69	1.00e-58	219.00
IUUC-Pan-091709	Papio anubis	30.16	2.00e-61	228.00
IUUC-Psi-093265	Pelodiscus sinensis	33.25	5.00e-63	233.00
IUUC-Pma-094482	Petromyzon marinus	35.62	9.00e-21	91.70
IUUC-Ppa-095365	Physcomitrella patens	26.24	4.00e-25	107.00
IUUC-Pfo-097494	Poecilia formosa	34.79	9.00e-64	236.00
IUUC-Pab-098362	Pongo abelii	30.16	5.00e-58	217.00
IUUC-Pop-099163	Populus trichocarpa	28.34	5.00e-22	97.80
IUUC-Pca-101019	Procavia capensis	29.76	2.00e-41	162.00
IUUC-Ppe-102101	Prunus persica	25.38	2.00e-26	112.00
IUUC-Pva-102849	Pteropus vampyrus	31.64	2.00e-55	208.00
IUUC-Rno-105511	Rattus norvegicus	33.14	1.00e-58	218.00
IUUC-Sha-107265	Sarcophilus harrisii	31.23	2.00e-53	202.00
IUUC-Smo-108866	Selaginella moellendorffii	23.30	5.00e-20	90.50
IUUC-Sit-110806	Setaria italica	26.73	6.00e-24	103.00
IUUC-Sly-110994	Solanum lycopersicum	24.59	2.00e-20	92.40
IUUC-Stu-112493	Solanum tuberosum	29.07	3.00e-18	84.00
IUUC-Sar-113628	Sorex araneus	31.01	5.00e-57	213.00
IUUC-Sbi-114397	Sorghum bicolor	26.06	5.00e-24	104.00
IUUC-Ssc-116418	Sus scrofa	29.95	5.00e-58	217.00
IUUC-Tgu-117054	Taeniopygia guttata	32.80	2.00e-60	224.00
IUUC-Tru-118504	Takifugu rubripes	33.90	1.00e-67	249.00
IUUC-Tni-120254	Tetraodon nigroviridis	35.73	2.00e-67	248.00
IUUC-Tca-121085	Theobroma cacao	27.57	1.00e-26	112.00
IUUC-Tae-124351	Triticum aestivum	25.66	3.00e-22	98.60
IUUC-Tur-126756	Triticum urartu	24.60	1.00e-20	92.40
IUUC-Tbe-127903	Tupaia belangeri	30.38	8.00e-56	209.00
IUUC-Ttr-129118	Tursiops truncatus	31.93	1.00e-57	215.00
IUUC-Vvi-131125	Vitis vinifera	26.80	5.00e-26	110.00
IUUC-Xtr-132287	Xenopus tropicalis	33.51	4.00e-62	230.00
IUUC-Xma-134246	Xiphophorus maculatus	35.34	4.00e-65	240.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence