iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000017251.6	ENSRNOT00000085470.1	ENSRNOP00000073422.1
ENSRNOG00000017251.6	ENSRNOT00000043271.3	ENSRNOP00000044213.4

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
microRNA	TRANSFAC	RAID2
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.60e-21	74.2	614	645

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sdtllvsGsdDgtikvWDlrt 32
           H++++++l + +++ lv+G d g i++WD r+
   Q: 614  HSAPINSLLLvDENVLVTGDDTGGIRLWDQRK 645
           9*******77555****************765 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MPREYNEDED PAARRRKKKS YYAKLRQQEI ERERELAEKY RDRAKERRDG VNKDYEETEL 60
ISTTANYRAV GPTAEADKSA AEKRRQLIQE SKFLGGDMEH THLVKGLDFA LLQKVRAEIA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGGAAGGCAC GGAAGGCAAA GCTCTGTCGC AGGCTTTCGT GGTGCATTGT GGATAAAAGT 60
TTGTCGCCGC TGTTTTGTTG AGGATATTTC GCGATTGCTG GCGCTGAGAG ACCGCGGCCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR024977--Apc4_WD40_dom
IPR012492--RED_C
IPR012916--RED_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12894--ANAPC4_WD40
PF07807--RED_C
PF07808--RED_N
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus

KEGG

rno:307494

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000562	Aegilops tauschii	37.11	4.00e-47	182.00
IUUC-Aml-001768	Ailuropoda melanoleuca	91.65	0.00e+00	1402.00
IUUC-Atr-002764	Amborella trichopoda	35.53	9.00e-22	95.90
IUUC-Apl-003880	Anas platyrhynchos	70.86	0.00e+00	1035.00
IUUC-Aca-005060	Anolis carolinensis	79.36	0.00e+00	1190.00
IUUC-Aly-006484	Arabidopsis lyrata	36.82	2.00e-49	189.00
IUUC-Ath-006652	Arabidopsis thaliana	38.98	4.00e-58	218.00
IUUC-Bta-013497	Bos taurus	90.00	0.00e+00	694.00
IUUC-Bdi-014378	Brachypodium distachyon	38.49	9.00e-56	210.00
IUUC-Bol-016352	Brassica oleracea	39.32	2.00e-60	225.00
IUUC-Bra-017103	Brassica rapa	39.32	1.00e-60	226.00
IUUC-Cel-018192	Caenorhabditis elegans	25.38	1.00e-14	74.30
IUUC-Cja-018792	Callithrix jacchus	87.50	0.00e+00	683.00
IUUC-Cfa-020739	Canis familiaris	90.83	0.00e+00	1363.00
IUUC-Cpo-022331	Cavia porcellus	90.89	0.00e+00	708.00
IUUC-Cre-022921	Chlamydomonas reinhardtii	40.43	3.00e-37	147.00
IUUC-Csa-023414	Chlorocebus sabaeus	88.54	0.00e+00	709.00
IUUC-Cho-024600	Choloepus hoffmanni	90.48	0.00e+00	637.00
IUUC-Cin-025565	Ciona intestinalis	38.69	7.00e-63	234.00
IUUC-Csv-026294	Ciona savignyi	37.20	2.00e-61	229.00
IUUC-Cne-026979	Cryptococcus neoformans	32.99	1.00e-39	157.00
IUUC-Cme-027192	Cyanidioschyzon merolae	26.13	1.00e-20	94.00
IUUC-Dre-028492	Danio rerio	62.94	5.00e-131	460.00
IUUC-Dno-030050	Dasypus novemcinctus	89.21	0.00e+00	1303.00
IUUC-Dor-030386	Dipodomys ordii	80.44	1.00e-169	588.00
IUUC-Dme-032012	Drosophila melanogaster	34.31	1.00e-58	221.00
IUUC-Ete-032491	Echinops telfairi	87.47	0.00e+00	682.00
IUUC-Eca-033583	Equus caballus	92.53	0.00e+00	1382.00
IUUC-Eeu-034976	Erinaceus europaeus	93.44	8.00e-176	609.00
IUUC-Fca-036417	Felis catus	88.80	0.00e+00	691.00
IUUC-Gmo-039505	Gadus morhua	66.17	5.00e-142	497.00
IUUC-Ggr-039978	Gaeumannomyces graminis	24.06	5.00e-12	65.50
IUUC-Gga-040732	Gallus gallus	67.13	1.00e-146	512.00
IUUC-Gac-041313	Gasterosteus aculeatus	62.85	1.00e-136	479.00
IUUC-Gma-044122	Glycine max	40.68	2.00e-58	219.00
IUUC-Ggo-044748	Gorilla gorilla	89.06	0.00e+00	713.00
IUUC-Hsa-046943	Homo sapiens	89.06	0.00e+00	712.00
IUUC-Hvu-047659	Hordeum vulgare	36.84	7.00e-54	204.00
IUUC-Itr-048110	Ictidomys tridecemlineatus	92.01	0.00e+00	685.00
IUUC-Lch-050331	Latimeria chalumnae	58.73	2.00e-115	408.00
IUUC-Lpe-051193	Leersia perrieri	39.44	6.00e-59	221.00
IUUC-Loc-051946	Lepisosteus oculatus	70.32	0.00e+00	922.00
IUUC-Laf-054035	Loxodonta africana	88.95	0.00e+00	674.00
IUUC-Mcc-055285	Macaca mulatta	87.63	1.00e-94	338.00
IUUC-Meu-056596	Macropus eugenii	85.09	7.00e-176	609.00
IUUC-Mor-056995	Magnaporthe oryzae	24.46	2.00e-13	70.10
IUUC-Mtr-058587	Medicago truncatula	39.06	2.00e-58	219.00
IUUC-Mga-059839	Meleagris gallopavo	72.70	0.00e+00	999.00
IUUC-Mdo-062868	Monodelphis domestica	81.05	0.00e+00	1251.00
IUUC-Mmu-064305	Mus musculus	96.81	0.00e+00	742.00
IUUC-Mac-065041	Musa acuminata	38.38	6.00e-57	214.00
IUUC-Mpu-066779	Mustela putorius furo	90.10	0.00e+00	683.00
IUUC-Mlu-067223	Myotis lucifugus	91.36	0.00e+00	1349.00
IUUC-Ncr-068919	Neurospora crassa	25.95	9.00e-09	54.70
IUUC-Nle-069852	Nomascus leucogenys	89.32	0.00e+00	689.00
IUUC-Ont-072452	Oreochromis niloticus	66.86	1.00e-141	496.00
IUUC-Oan-073163	Ornithorhynchus anatinus	82.76	2.00e-67	247.00
IUUC-Ocu-074628	Oryctolagus cuniculus	92.29	0.00e+00	705.00
IUUC-Oba-075868	Oryza barthii	38.73	2.00e-56	213.00
IUUC-Obr-076768	Oryza brachyantha	39.08	8.00e-58	217.00
IUUC-Ogl-077424	Oryza glaberrima	39.44	4.00e-59	221.00
IUUC-Ogu-078847	Oryza glumaepatula	39.08	5.00e-57	214.00
IUUC-Oin-079495	Oryza indica	39.44	4.00e-59	221.00
IUUC-Olo-080268	Oryza longistaminata	39.08	6.00e-57	214.00
IUUC-Ome-081709	Oryza meridionalis	38.85	2.00e-50	192.00
IUUC-Oni-082749	Oryza nivara	39.44	4.00e-59	221.00
IUUC-Opu-084023	Oryza punctata	32.75	9.00e-40	157.00
IUUC-Oru-084764	Oryza rufipogon	39.08	5.00e-57	214.00
IUUC-Osa-086009	Oryza sativa	39.44	6.00e-59	221.00
IUUC-Ola-086463	Oryzias latipes	60.96	5.00e-132	463.00
IUUC-Olu-087897	Ostreococcus lucimarinus	31.23	2.00e-43	169.00
IUUC-Oga-089114	Otolemur garnettii	88.95	0.00e+00	691.00
IUUC-Ptr-090556	Pan troglodytes	89.32	0.00e+00	715.00
IUUC-Pan-092828	Papio anubis	88.54	0.00e+00	709.00
IUUC-Psi-093609	Pelodiscus sinensis	76.10	0.00e+00	1049.00
IUUC-Pma-094413	Petromyzon marinus	54.29	4.00e-103	367.00
IUUC-Ppa-095422	Physcomitrella patens	41.47	5.00e-67	248.00
IUUC-Pfo-096389	Poecilia formosa	65.68	3.00e-134	471.00
IUUC-Pab-098095	Pongo abelii	89.32	0.00e+00	711.00
IUUC-Pop-099612	Populus trichocarpa	38.52	2.00e-54	206.00
IUUC-Pca-100408	Procavia capensis	89.23	0.00e+00	679.00
IUUC-Ppe-101931	Prunus persica	38.64	5.00e-54	204.00
IUUC-Pva-102549	Pteropus vampyrus	90.36	0.00e+00	689.00
IUUC-Sha-107299	Sarcophilus harrisii	87.75	0.00e+00	1252.00
IUUC-Sja-107829	Schizosaccharomyces japonicus	29.45	5.00e-22	98.60
IUUC-Spo-108122	Schizosaccharomyces pombe	29.82	1.00e-27	116.00
IUUC-Smo-109613	Selaginella moellendorffii	40.21	3.00e-52	198.00
IUUC-Sit-110263	Setaria italica	38.03	4.00e-56	211.00
IUUC-Sly-110988	Solanum lycopersicum	37.46	7.00e-53	201.00
IUUC-Stu-112713	Solanum tuberosum	37.81	6.00e-54	204.00
IUUC-Sbi-114617	Sorghum bicolor	37.32	6.00e-54	204.00
IUUC-Sre-115136	Sporisorium reilianum	30.68	1.00e-12	67.80
IUUC-Ssc-116268	Sus scrofa	90.75	0.00e+00	1375.00
IUUC-Tgu-116720	Taeniopygia guttata	78.10	0.00e+00	976.00
IUUC-Tru-117977	Takifugu rubripes	66.67	2.00e-133	468.00
IUUC-Tsy-119121	Tarsius syrichta	87.78	4.00e-114	404.00
IUUC-Tni-119904	Tetraodon nigroviridis	69.05	3.00e-136	478.00
IUUC-Tca-121718	Theobroma cacao	40.28	6.00e-59	221.00
IUUC-Tae-124219	Triticum aestivum	37.54	2.00e-54	206.00
IUUC-Tme-126922	Tuber melanosporum	22.71	5.00e-14	72.80
IUUC-Tbe-127276	Tupaia belangeri	92.59	2.00e-159	554.00
IUUC-Uma-129505	Ustilago maydis	31.71	3.00e-13	69.70
IUUC-Vpa-130276	Vicugna pacos	91.63	2.00e-135	474.00
IUUC-Vvi-131377	Vitis vinifera	39.58	2.00e-57	218.00
IUUC-Xtr-132529	Xenopus tropicalis	75.09	0.00e+00	1174.00
IUUC-Xma-134177	Xiphophorus maculatus	65.38	1.00e-126	446.00
IUUC-Yli-134665	Yarrowia lipolytica	25.10	5.00e-07	48.50

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence