iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
microRNA	miRNAMap	RAID2
Protein-protein Interaction
IID
Post-translational Modifications (PTMs)
dbPAF
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.50e-16	59.4	342	382

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd..tllvsGsdDgtikvWDlrtgvllks 38
           gHt+ v+++   ++   ll+sG+ Dgt+++W + tg+++k+
   Q: 342  GHTGQVRAITVePErgELLASGGEDGTVRIWMIATGRCIKT 382
           8********999666699********************985 PP

Organism

Caenorhabditis elegans

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MASTSAATPL KNKRKFENGK KKPKTLKDEF GEKLDIKPVI VPPKPADEYD YDSSDEEDLR 60
NTIGNIPIKW YDDEDHIGYD KFGEKIAKPA KKGEIETFLE KMEDPDYWRK VFDKQTGTDV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCTTCAA CGTCGGCGGC AACTCCGCTG AAGAACAAGC GAAAGTTTGA AAATGGGAAA 60
AAGAAGCCAA AAACGCTGAA AGACGAGTTT GGCGAGAAGC TCGACATCAA ACCGGTGATA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

cel:CELE_Y48B6A.1

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001158	Aegilops tauschii	37.86	5.00e-108	384.00
IUUC-Aml-001507	Ailuropoda melanoleuca	46.70	4.00e-152	530.00
IUUC-Atr-003141	Amborella trichopoda	41.40	7.00e-85	306.00
IUUC-Apl-003545	Anas platyrhynchos	45.83	1.00e-143	501.00
IUUC-Aly-005649	Arabidopsis lyrata	39.52	2.00e-130	458.00
IUUC-Ath-007625	Arabidopsis thaliana	40.10	4.00e-130	457.00
IUUC-Ago-007958	Ashbya gossypii	39.39	1.00e-136	479.00
IUUC-Acl-008344	Aspergillus clavatus	37.98	3.00e-122	431.00
IUUC-Afl-008616	Aspergillus flavus	37.76	3.00e-120	424.00
IUUC-Afu-009083	Aspergillus fumigatus	38.34	8.00e-119	420.00
IUUC-Ani-009365	Aspergillus nidulans	37.61	1.00e-119	422.00
IUUC-Ang-009796	Aspergillus niger	37.32	2.00e-116	412.00
IUUC-Aor-010015	Aspergillus oryzae	37.76	4.00e-120	424.00
IUUC-Ate-010537	Aspergillus terreus	38.59	1.00e-123	436.00
IUUC-Ame-011767	Astyanax mexicanus	44.78	1.00e-63	234.00
IUUC-Bgr-012286	Blumeria graminis	38.77	4.00e-121	427.00
IUUC-Bta-013569	Bos taurus	46.39	5.00e-159	553.00
IUUC-Bci-013820	Botrytis cinerea	39.42	4.00e-118	417.00
IUUC-Bdi-014477	Brachypodium distachyon	40.65	2.00e-131	461.00
IUUC-Bol-016099	Brassica oleracea	39.94	2.00e-132	465.00
IUUC-Bra-017174	Brassica rapa	39.77	4.00e-132	464.00
IUUC-Cja-019009	Callithrix jacchus	41.73	8.00e-141	493.00
IUUC-Cfa-020173	Canis familiaris	43.89	8.00e-151	526.00
IUUC-Cpo-021796	Cavia porcellus	47.83	1.00e-162	565.00
IUUC-Cre-022650	Chlamydomonas reinhardtii	40.35	8.00e-132	462.00
IUUC-Csa-023440	Chlorocebus sabaeus	46.39	4.00e-165	573.00
IUUC-Cin-025782	Ciona intestinalis	42.10	4.00e-151	527.00
IUUC-Csv-026352	Ciona savignyi	41.61	1.00e-148	518.00
IUUC-Cgl-026393	Colletotrichum gloeosporioides	36.45	2.00e-98	352.00
IUUC-Cne-027004	Cryptococcus neoformans	38.31	5.00e-137	480.00
IUUC-Cme-027242	Cyanidioschyzon merolae	32.11	6.00e-100	357.00
IUUC-Dre-028658	Danio rerio	48.82	1.00e-179	621.00
IUUC-Dno-028883	Dasypus novemcinctus	46.20	2.00e-161	561.00
IUUC-Dor-031031	Dipodomys ordii	46.07	1.00e-166	578.00
IUUC-Dse-031443	Dothistroma septosporum	36.05	2.00e-123	435.00
IUUC-Dme-031786	Drosophila melanogaster	43.55	4.00e-160	557.00
IUUC-Eca-033677	Equus caballus	46.39	7.00e-160	556.00
IUUC-Eeu-035310	Erinaceus europaeus	47.42	6.00e-134	469.00
IUUC-Fca-035888	Felis catus	45.26	2.00e-160	558.00
IUUC-Fal-037438	Ficedula albicollis	42.00	3.00e-123	434.00
IUUC-Fox-037973	Fusarium oxysporum	37.02	2.00e-127	448.00
IUUC-Fso-038187	Fusarium solani	37.33	2.00e-127	448.00
IUUC-Gmo-039114	Gadus morhua	44.80	4.00e-153	533.00
IUUC-Ggr-039746	Gaeumannomyces graminis	37.94	5.00e-126	443.00
IUUC-Gga-040631	Gallus gallus	42.06	1.00e-75	275.00
IUUC-Gac-042582	Gasterosteus aculeatus	48.36	1.00e-164	571.00
IUUC-Gma-044215	Glycine max	39.11	9.00e-121	426.00
IUUC-Ggo-045587	Gorilla gorilla	46.40	1.00e-166	578.00
IUUC-Hsa-046319	Homo sapiens	46.39	4.00e-166	577.00
IUUC-Hvu-047526	Hordeum vulgare	40.87	9.00e-126	442.00
IUUC-Itr-048683	Ictidomys tridecemlineatus	46.55	1.00e-161	562.00
IUUC-Kpa-049221	Komagataella pastoris	37.19	2.00e-126	445.00
IUUC-Lch-049640	Latimeria chalumnae	49.29	0.00e+00	630.00
IUUC-Lpe-051135	Leersia perrieri	38.27	1.00e-115	408.00
IUUC-Loc-051930	Lepisosteus oculatus	48.08	2.00e-177	614.00
IUUC-Lma-053290	Leptosphaeria maculans	38.65	2.00e-118	418.00
IUUC-Laf-053903	Loxodonta africana	41.89	8.00e-137	479.00
IUUC-Mcc-055471	Macaca mulatta	46.39	3.00e-165	574.00
IUUC-Meu-056190	Macropus eugenii	46.15	4.00e-162	563.00
IUUC-Mor-057135	Magnaporthe oryzae	37.16	3.00e-115	407.00
IUUC-Mpo-057475	Magnaporthe poae	36.87	1.00e-116	412.00
IUUC-Mtr-058689	Medicago truncatula	37.65	2.00e-114	405.00
IUUC-Mla-059149	Melampsora laricipopulina	39.76	1.00e-141	495.00
IUUC-Mga-059645	Meleagris gallopavo	37.96	5.00e-45	172.00
IUUC-Mvi-060485	Microbotryum violaceum	39.67	2.00e-120	426.00
IUUC-Mmr-061674	Microcebus murinus	45.12	9.00e-156	542.00
IUUC-Mdo-062973	Monodelphis domestica	47.03	2.00e-166	578.00
IUUC-Mmu-064180	Mus musculus	46.71	3.00e-161	561.00
IUUC-Mac-064535	Musa acuminata	41.42	4.00e-92	331.00
IUUC-Mpu-066406	Mustela putorius furo	46.87	6.00e-163	566.00
IUUC-Mlu-067795	Myotis lucifugus	46.71	1.00e-153	535.00
IUUC-Nfi-068516	Neosartorya fischeri	38.04	1.00e-111	396.00
IUUC-Ncr-068767	Neurospora crassa	37.48	1.00e-112	399.00
IUUC-Opr-071084	Ochotona princeps	47.25	9.00e-69	252.00
IUUC-Ont-071614	Oreochromis niloticus	48.25	3.00e-175	607.00
IUUC-Oba-075980	Oryza barthii	38.67	3.00e-116	410.00
IUUC-Obr-076799	Oryza brachyantha	41.20	8.00e-131	459.00
IUUC-Ogl-077134	Oryza glaberrima	40.48	8.00e-126	442.00
IUUC-Ogu-078655	Oryza glumaepatula	38.71	6.00e-120	423.00
IUUC-Oin-079654	Oryza indica	40.48	9.00e-126	442.00
IUUC-Olo-080706	Oryza longistaminata	38.83	4.00e-116	410.00
IUUC-Ome-081716	Oryza meridionalis	35.23	7.00e-99	353.00
IUUC-Oni-082508	Oryza nivara	37.52	9.00e-116	409.00
IUUC-Opu-083707	Oryza punctata	38.67	3.00e-115	407.00
IUUC-Oru-084453	Oryza rufipogon	38.83	4.00e-116	410.00
IUUC-Osa-085811	Oryza sativa	40.32	1.00e-125	442.00
IUUC-Ola-087361	Oryzias latipes	48.91	6.00e-177	612.00
IUUC-Oga-088015	Otolemur garnettii	45.10	2.00e-161	561.00
IUUC-Oar-090058	Ovis aries	34.99	4.00e-57	214.00
IUUC-Ptr-090631	Pan troglodytes	48.73	2.00e-81	294.00
IUUC-Pan-092306	Papio anubis	46.63	2.00e-165	574.00
IUUC-Pma-094622	Petromyzon marinus	46.08	4.00e-173	600.00
IUUC-Pno-094794	Phaeosphaeria nodorum	35.12	7.00e-111	393.00
IUUC-Ppa-095528	Physcomitrella patens	42.56	4.00e-91	327.00
IUUC-Pfo-096682	Poecilia formosa	47.73	7.00e-179	619.00
IUUC-Pab-097939	Pongo abelii	45.60	1.00e-144	504.00
IUUC-Pop-099043	Populus trichocarpa	40.24	3.00e-114	404.00
IUUC-Pca-100333	Procavia capensis	45.26	2.00e-155	541.00
IUUC-Ppe-102078	Prunus persica	39.74	1.00e-125	442.00
IUUC-Pgr-103525	Puccinia graminis	40.60	4.00e-134	470.00
IUUC-Ptt-103929	Puccinia triticina	40.10	6.00e-129	453.00
IUUC-Pte-104029	Pyrenophora teres	39.02	3.00e-133	467.00
IUUC-Pyt-104446	Pyrenophora triticirepentis	38.86	3.00e-132	464.00
IUUC-Rno-105248	Rattus norvegicus	47.03	1.00e-162	565.00
IUUC-Sce-106381	Saccharomyces cerevisiae	38.74	4.00e-135	474.00
IUUC-Sha-106519	Sarcophilus harrisii	47.05	1.00e-168	585.00
IUUC-Sja-107908	Schizosaccharomyces japonicus	36.32	4.00e-120	424.00
IUUC-Spo-108071	Schizosaccharomyces pombe	35.83	4.00e-116	410.00
IUUC-Smo-109604	Selaginella moellendorffii	42.25	2.00e-135	474.00
IUUC-Sit-110551	Setaria italica	40.16	3.00e-127	447.00
IUUC-Sly-110970	Solanum lycopersicum	42.65	1.00e-76	279.00
IUUC-Stu-112593	Solanum tuberosum	40.19	7.00e-133	466.00
IUUC-Sar-113123	Sorex araneus	39.24	1.00e-56	212.00
IUUC-Sbi-113945	Sorghum bicolor	40.10	3.00e-128	451.00
IUUC-Sre-115188	Sporisorium reilianum	40.61	4.00e-136	478.00
IUUC-Ssc-115352	Sus scrofa	46.40	2.00e-164	570.00
IUUC-Tru-117685	Takifugu rubripes	48.74	8.00e-178	615.00
IUUC-Tni-119982	Tetraodon nigroviridis	48.01	7.00e-169	585.00
IUUC-Tca-121664	Theobroma cacao	39.78	1.00e-129	456.00
IUUC-Tre-122229	Trichoderma reesei	37.08	1.00e-110	392.00
IUUC-Tvi-122576	Trichoderma virens	37.98	2.00e-112	398.00
IUUC-Tae-124110	Triticum aestivum	40.94	1.00e-118	419.00
IUUC-Tur-126781	Triticum urartu	38.20	6.00e-105	374.00
IUUC-Tme-127080	Tuber melanosporum	41.04	3.00e-143	501.00
IUUC-Ttr-128514	Tursiops truncatus	46.83	5.00e-115	407.00
IUUC-Uma-129556	Ustilago maydis	39.97	2.00e-130	459.00
IUUC-Vda-129715	Verticillium dahliae	38.13	2.00e-119	421.00
IUUC-Vvi-131211	Vitis vinifera	39.43	2.00e-122	431.00
IUUC-Xma-133883	Xiphophorus maculatus	47.64	1.00e-173	602.00
IUUC-Yli-134438	Yarrowia lipolytica	38.03	4.00e-119	421.00
IUUC-Zma-135341	Zea mays	32.55	1.00e-88	319.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence