iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d002483	Zm00001d002483_T006	Zm00001d002483_T006
Zm00001d002483	Zm00001d002483_T007	Zm00001d002483_T007
Zm00001d002483	Zm00001d002483_T003	Zm00001d002483_T003

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.60e-52	175.1	157	196
UBD/Beta-Prp	2.00e-109	367.4	420	683

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf...sd.tllvsGsdDgtikvWDlrtgvll 36
           gHt+ vt++ f   +   ll sGs Dgt++vW+l t +++
   Q: 157  GHTGVVTSVMFhkdPKrLLLFSGSEDGTVRVWNLETKKCV 196
           8***********76555668**************999986 PP

UBD/Beta-Prp

   S: 18   fspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgk.ilvtgseDrtikvwdls..........tgkcvhtlkgheds 96
              +k+l++tgs+d+t+++wd+++++++   +gh ++v +v fs+++k ++v+gs+Drtikvw  +            k   ++ +h+++
   Q: 420  A-SGKTLVVTGSKDNTVRLWDAERKSCIGIGKGHLGAVGSVAFSKKTKdFFVSGSSDRTIKVWTWDntlgdaedevPLKAKAVVAAHDKD 508
           3.6899**************************************99888**************44444555556665666677789**** PP
   S: 97   vlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvysl 186
           +  l++sp++  + sGs+drt+ +w+l++   +   l+gh++ +++v+++p +++++++s Drt+++W+++ g++l+t++g ht+sv   
   Q: 509  INYLTVSPNDGLVCSGSEDRTACIWKLPNLVFSV-ALKGHKRGIWSVEFSPVEQCVMTSSGDRTIKIWSVADGSCLKTFEG-HTSSVLRA 596
           **********************************.*********************************************9.******** PP
   S: 187  sfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriW.dlrsgdllktlqlhnssvisvav 272
           sf s g+++vs++ dg vklw ++t+ec+ t+  h+  v+ +++ +++e +++g+ D ++++W d++  d    + +++s   + ++
   Q: 597  SFLSRGTQVVSCGSDGLVKLWTIKTNECIATYDKHDGKVWALAVGRKTEMVATGGTDAVLNLWhDCTMEDKQEDFRKKASETFCDTL 683
           ****************************************************************99999999999998754444333 PP

Organism

Zea mays

Protein Sequence
(Fasta)

MASSSTCVLK KNYRCDRSLQ QFYTGGPFAV GLAPGGDGEG GAEAEAFLAC ACGGEVRVVS 60
SADASAIGEP VDGDSEAITA LALSPDSRLL FAAGHSRLIR AWDLASRACI RSWKGHDGPI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACTTGACTTC GCTTAAACCC TGATCCTCTT CCTCCCTCTC CTCCGGTCCT CCCGCGCCGC 60
CACCCCCATC TCCCACCGCA AAACCTTAGG TCCGACGAGC CCCCGCCGTT GCCGTGGGCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR011047--Quinoprotein_ADH-like_supfam
IPR013934--SSU_processome_Utp13
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08625--Utp13
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0032040--C:small-subunit processome
GO:0006364--P:rRNA processing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000765	Aegilops tauschii	74.80	0.00e+00	1270.00
IUUC-Aml-002376	Ailuropoda melanoleuca	36.52	2.00e-152	532.00
IUUC-Atr-002486	Amborella trichopoda	60.47	0.00e+00	1068.00
IUUC-Apl-003519	Anas platyrhynchos	32.62	7.00e-115	407.00
IUUC-Aca-004363	Anolis carolinensis	34.24	2.00e-74	272.00
IUUC-Aly-006152	Arabidopsis lyrata	60.85	0.00e+00	1043.00
IUUC-Ath-006966	Arabidopsis thaliana	60.83	0.00e+00	1050.00
IUUC-Ago-007746	Ashbya gossypii	30.43	1.00e-101	363.00
IUUC-Afl-008681	Aspergillus flavus	29.24	1.00e-96	347.00
IUUC-Ang-009640	Aspergillus niger	30.87	3.00e-109	389.00
IUUC-Aor-010160	Aspergillus oryzae	29.40	2.00e-96	347.00
IUUC-Ate-010320	Aspergillus terreus	29.87	6.00e-105	375.00
IUUC-Ame-010930	Astyanax mexicanus	36.92	1.00e-38	152.00
IUUC-Bgr-012054	Blumeria graminis	30.48	3.00e-100	359.00
IUUC-Bta-012611	Bos taurus	37.22	5.00e-148	517.00
IUUC-Bdi-014384	Brachypodium distachyon	82.91	0.00e+00	1448.00
IUUC-Bol-016483	Brassica oleracea	58.49	0.00e+00	1042.00
IUUC-Bra-017798	Brassica rapa	59.32	0.00e+00	1023.00
IUUC-Cel-018664	Caenorhabditis elegans	27.39	3.00e-89	322.00
IUUC-Cja-019092	Callithrix jacchus	36.65	5.00e-153	534.00
IUUC-Cre-022986	Chlamydomonas reinhardtii	56.20	4.00e-48	182.00
IUUC-Cin-025560	Ciona intestinalis	35.21	3.00e-147	514.00
IUUC-Cgl-026481	Colletotrichum gloeosporioides	30.20	2.00e-111	396.00
IUUC-Dre-028138	Danio rerio	36.31	4.00e-156	545.00
IUUC-Dno-029914	Dasypus novemcinctus	34.70	1.00e-101	363.00
IUUC-Dme-031995	Drosophila melanogaster	28.75	7.00e-91	328.00
IUUC-Ete-033086	Echinops telfairi	38.68	2.00e-89	323.00
IUUC-Eca-034354	Equus caballus	36.34	5.00e-144	504.00
IUUC-Eeu-034832	Erinaceus europaeus	37.66	1.00e-88	320.00
IUUC-Fal-036859	Ficedula albicollis	36.80	3.00e-156	545.00
IUUC-Fox-037863	Fusarium oxysporum	30.11	7.00e-102	364.00
IUUC-Gmo-038711	Gadus morhua	34.51	1.00e-136	479.00
IUUC-Gga-040263	Gallus gallus	36.66	2.00e-158	552.00
IUUC-Gac-041291	Gasterosteus aculeatus	36.18	5.00e-159	554.00
IUUC-Gma-044026	Glycine max	63.08	0.00e+00	1104.00
IUUC-Hsa-046048	Homo sapiens	36.61	1.00e-150	526.00
IUUC-Hvu-047608	Hordeum vulgare	81.73	0.00e+00	1434.00
IUUC-Kpa-049209	Komagataella pastoris	31.54	8.00e-113	400.00
IUUC-Lch-050085	Latimeria chalumnae	36.51	7.00e-145	507.00
IUUC-Lpe-050945	Leersia perrieri	80.16	0.00e+00	1375.00
IUUC-Loc-052679	Lepisosteus oculatus	37.69	6.00e-173	600.00
IUUC-Meu-056820	Macropus eugenii	34.83	8.00e-116	410.00
IUUC-Mor-057234	Magnaporthe oryzae	30.36	2.00e-94	340.00
IUUC-Mtr-058122	Medicago truncatula	60.46	0.00e+00	1079.00
IUUC-Mla-058980	Melampsora laricipopulina	29.49	2.00e-82	299.00
IUUC-Mga-060080	Meleagris gallopavo	35.91	2.00e-155	542.00
IUUC-Mvi-060338	Microbotryum violaceum	33.71	9.00e-140	490.00
IUUC-Mdo-061975	Monodelphis domestica	37.54	3.00e-152	532.00
IUUC-Mac-065189	Musa acuminata	64.91	0.00e+00	1169.00
IUUC-Mpu-066526	Mustela putorius furo	36.98	6.00e-146	511.00
IUUC-Ncr-068826	Neurospora crassa	26.65	2.00e-93	336.00
IUUC-Ont-072371	Oreochromis niloticus	37.57	5.00e-160	558.00
IUUC-Oan-073491	Ornithorhynchus anatinus	35.98	2.00e-125	442.00
IUUC-Oba-075963	Oryza barthii	81.07	0.00e+00	1429.00
IUUC-Obr-076173	Oryza brachyantha	82.88	0.00e+00	1414.00
IUUC-Ogl-077692	Oryza glaberrima	80.96	0.00e+00	1426.00
IUUC-Ogu-078965	Oryza glumaepatula	81.07	0.00e+00	1429.00
IUUC-Oin-079708	Oryza indica	80.73	0.00e+00	1425.00
IUUC-Olo-080679	Oryza longistaminata	80.96	0.00e+00	1429.00
IUUC-Opu-083282	Oryza punctata	81.90	0.00e+00	1400.00
IUUC-Oru-085224	Oryza rufipogon	80.96	0.00e+00	1427.00
IUUC-Osa-085320	Oryza sativa	80.96	0.00e+00	1427.00
IUUC-Ola-086370	Oryzias latipes	32.13	3.00e-74	272.00
IUUC-Olu-087814	Ostreococcus lucimarinus	34.39	6.00e-123	434.00
IUUC-Oar-090032	Ovis aries	34.88	4.00e-110	391.00
IUUC-Ptr-090749	Pan troglodytes	36.61	2.00e-150	526.00
IUUC-Psi-093200	Pelodiscus sinensis	35.71	1.00e-155	543.00
IUUC-Pma-094165	Petromyzon marinus	34.68	1.00e-107	383.00
IUUC-Pno-095048	Phaeosphaeria nodorum	31.06	1.00e-88	320.00
IUUC-Ppa-095336	Physcomitrella patens	51.29	0.00e+00	856.00
IUUC-Pab-097855	Pongo abelii	36.55	2.00e-154	539.00
IUUC-Pop-099434	Populus trichocarpa	59.35	0.00e+00	1029.00
IUUC-Ppe-101665	Prunus persica	60.00	0.00e+00	1084.00
IUUC-Pgr-103288	Puccinia graminis	28.30	2.00e-82	300.00
IUUC-Ptt-103808	Puccinia triticina	29.40	4.00e-80	292.00
IUUC-Pte-104205	Pyrenophora teres	30.95	1.00e-106	380.00
IUUC-Pyt-104658	Pyrenophora triticirepentis	28.99	2.00e-97	350.00
IUUC-Rno-105617	Rattus norvegicus	37.65	6.00e-155	540.00
IUUC-Sce-106281	Saccharomyces cerevisiae	30.54	9.00e-104	370.00
IUUC-Sha-107378	Sarcophilus harrisii	37.49	1.00e-152	533.00
IUUC-Sja-107718	Schizosaccharomyces japonicus	32.08	8.00e-114	404.00
IUUC-Spo-108361	Schizosaccharomyces pombe	31.95	5.00e-117	414.00
IUUC-Ssl-108592	Sclerotinia sclerotiorum	29.92	3.00e-109	389.00
IUUC-Smo-109257	Selaginella moellendorffii	51.85	0.00e+00	865.00
IUUC-Sly-111521	Solanum lycopersicum	60.70	0.00e+00	1055.00
IUUC-Sar-113586	Sorex araneus	43.45	9.00e-24	104.00
IUUC-Sre-115159	Sporisorium reilianum	31.85	1.00e-90	327.00
IUUC-Ssc-116342	Sus scrofa	29.97	2.00e-70	259.00
IUUC-Tgu-117320	Taeniopygia guttata	36.35	1.00e-144	506.00
IUUC-Tru-118024	Takifugu rubripes	37.53	6.00e-159	554.00
IUUC-Tni-119971	Tetraodon nigroviridis	38.06	2.00e-160	559.00
IUUC-Tca-121248	Theobroma cacao	64.62	0.00e+00	1068.00
IUUC-Tre-122079	Trichoderma reesei	28.32	3.00e-103	369.00
IUUC-Tvi-122554	Trichoderma virens	27.32	1.00e-102	367.00
IUUC-Tae-123552	Triticum aestivum	82.93	0.00e+00	1446.00
IUUC-Tur-126436	Triticum urartu	73.26	0.00e+00	1113.00
IUUC-Tme-126942	Tuber melanosporum	31.85	4.00e-112	398.00
IUUC-Tbe-128000	Tupaia belangeri	35.12	6.00e-21	95.90
IUUC-Uma-129473	Ustilago maydis	29.63	4.00e-94	339.00
IUUC-Vda-129749	Verticillium dahliae	28.99	2.00e-97	349.00
IUUC-Vvi-131511	Vitis vinifera	63.85	0.00e+00	1086.00
IUUC-Xtr-132816	Xenopus tropicalis	32.67	5.00e-129	454.00
IUUC-Xma-133672	Xiphophorus maculatus	37.87	1.00e-161	563.00
IUUC-Yli-134602	Yarrowia lipolytica	34.72	4.00e-132	464.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence