iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Aml-001537

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Ubiquitinyl hydrolase 1

Genbank Nucleotide ID

ACTA01040842

Gene Name

USP3; PANDA_002153

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSAMEG00000002345.1	ENSAMET00000002598.1	ENSAMEP00000002490.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	3.80e-100	335.4	159	510
UBD/ZnF/ZnF_UBP	2.00e-27	95.3	27	104

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

DUB/USP

   S: 1    tGlkNlgNtCYmNSvLQcLsnipelrellle...........kkkeklneenpkepkgellkslqklfeelwkskkkavsprellkalk 78
           tGl+NlgNtC+mN++LQ+Lsni+++ ++++e             +++ + +++ +++ +l+++++k + +lw+++++a+sp++l+ +++
   Q: 159  TGLRNLGNTCFMNAILQSLSNIEQFCCYFKElpavelrngktAGRRTYHTRSQGDNNVSLVEEFRKTLCALWQGSQTAFSPESLFYVVW 247
           7******************************888888777765555555555688889******************************* PP
   S: 79   keaeefsgyeqqDaqEflaflldqleeelkkeknkpkeeeeeedkselsdeaeekkkkknkslisdlFqgqlksqikclecdnvssree 167
           k+ ++f+gy+qqDa+Ef+++lld+l+ el+   n    ++  +++s+ls  +++   +  +++++ +F+g l++++ cl c+++s +++
   Q: 248  KIMPNFRGYQQQDAHEFMRYLLDHLHLELQGGFNGVSRSAILQENSTLS-ASNKCCINGASTVVTAIFGGILQNEVNCLICGTESRKFD 335
           *****************************77444444444444444444.45688899999**************************** PP
   S: 168  pfldlslpvpgkeetkke.........slqdcLesftkeeelegenkyycekckkkqeaekklklkklPevLilhLkRfsfseeqksre 247
           pfldlsl++p++  +k +         sl+dcL+sft  eel++ + y c +ckkkq+++kk++++klP+vL+lhLkRf+++   + r+
   Q: 336  PFLDLSLDIPSQFRNKRSknqengpvcSLRDCLRSFTDLEELDETELYMCHRCKKKQKSTKKFWIQKLPKVLCLHLKRFHWTA--YLRN 422
           **********66655444667899999****************************************************7755..799* PP
   S: 248  kinkkvefple.LdlspfctspeekqkekkkYeLiavvvHsG.slssGHYvayvknekgkWllfdDskVtevkeeevleetgstaYvlf 334
           k++++vefpl+ Ld++ ++ +pe++  e++ Y+L avvvH+G +++sGHY+ay+ + +g+W++f+Ds+Vt ++e++v++   ++aY+lf
   Q: 423  KVDTYVEFPLRgLDMKCYLLEPENSGPEHCLYDLAAVVVHHGsGVGSGHYTAYAAH-EGRWFHFNDSTVTLTDEDTVVK---AKAYILF 507
           ********************************************************.9*********************...******* PP
   S: 335  Ykr 337
           Y +
   Q: 508  YVE 510
           *76 PP

UBD/ZnF/ZnF_UBP

   S: 1    kkcsvcdktenlWlcLtcgsvgCGRyvegHalkHyeetqhpl................vlslstlsvycYacddyvhr 62
           ++csvc++++++W+cLtc+sv+CGRyv+gHa+kHye++q+pl                ++++s++s+ycY+cdd+v++
   Q: 27   WCCSVCRSNKSPWVCLTCSSVHCGRYVNGHAKKHYEDAQVPLtnhkksekqdkpqhtvCMDCSSYSTYCYRCDDFVVN 104
           9***************************************************************************85 PP

Organism

Ailuropoda melanoleuca

Protein Sequence
(Fasta)

MECPHLSSSV CIAPDSAKFP NGSPSSWCCS VCRSNKSPWV CLTCSSVHCG RYVNGHAKKH 60
YEDAQVPLTN HKKSEKQDKP QHTVCMDCSS YSTYCYRCDD FVVNDTKLGL VQKVREHLQN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGAGTGTC CGCACCTCAG CTCCAGCGTC TGCATCGCTC CGGACTCAGC TAAGTTCCCC 60
AACGGCTCCC CGTCGTCCTG GTGTTGCAGC GGTGAGTGCG GCCCTGGAGC GGCCCTGCCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0378--Hydrolase
KW-0479--Metal-binding
KW-0645--Protease
KW-1185--Reference proteome
KW-0788--Thiol protease
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001394--Peptidase_C19_UCH
IPR018200--USP_CS
IPR028889--USP_dom
IPR013083--Znf_RING/FYVE/PHD
IPR001607--Znf_UBP

PROSITE

PS00972--USP_1
PS00973--USP_2
PS50235--USP_3
PS50271--ZF_UBP

Pfam

PF00443--UCH
PF02148--zf-UBP

SMART

SM00290--ZnF_UBP

Gene Ontology

GO:0070938--C:contractile ring
GO:0000790--C:nuclear chromatin
GO:0005654--C:nucleoplasm
GO:0036459--F:thiol-dependent ubiquitinyl hydrolase activity
GO:0008270--F:zinc ion binding
GO:0006281--P:DNA repair
GO:0016578--P:histone deubiquitination
GO:0000278--P:mitotic cell cycle
GO:0031647--P:regulation of protein stability
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG

aml:100470750

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Apl-003358	Anas platyrhynchos	95.51	0.00e+00	898.00
IUUC-Aca-004454	Anolis carolinensis	91.99	0.00e+00	826.00
IUUC-Ame-011544	Astyanax mexicanus	76.60	0.00e+00	742.00
IUUC-Bta-012738	Bos taurus	97.31	0.00e+00	933.00
IUUC-Cel-018186	Caenorhabditis elegans	36.80	1.00e-56	214.00
IUUC-Cja-018893	Callithrix jacchus	97.88	0.00e+00	949.00
IUUC-Cfa-020607	Canis familiaris	99.42	0.00e+00	952.00
IUUC-Cpo-021828	Cavia porcellus	95.77	0.00e+00	919.00
IUUC-Csa-023884	Chlorocebus sabaeus	98.12	0.00e+00	775.00
IUUC-Cho-024863	Choloepus hoffmanni	88.08	0.00e+00	813.00
IUUC-Dre-028452	Danio rerio	73.66	0.00e+00	754.00
IUUC-Dno-029531	Dasypus novemcinctus	96.73	0.00e+00	868.00
IUUC-Dor-030913	Dipodomys ordii	88.92	1.00e-176	612.00
IUUC-Ete-032611	Echinops telfairi	91.73	0.00e+00	879.00
IUUC-Eca-033622	Equus caballus	98.37	0.00e+00	878.00
IUUC-Eeu-035268	Erinaceus europaeus	92.64	0.00e+00	799.00
IUUC-Fca-035801	Felis catus	97.96	0.00e+00	910.00
IUUC-Fal-036749	Ficedula albicollis	94.50	0.00e+00	850.00
IUUC-Gmo-039598	Gadus morhua	76.71	0.00e+00	772.00
IUUC-Gga-040883	Gallus gallus	95.71	0.00e+00	863.00
IUUC-Gac-042235	Gasterosteus aculeatus	76.01	0.00e+00	749.00
IUUC-Ggo-044767	Gorilla gorilla	92.06	0.00e+00	835.00
IUUC-Hsa-046581	Homo sapiens	97.88	0.00e+00	971.00
IUUC-Itr-047898	Ictidomys tridecemlineatus	97.88	0.00e+00	938.00
IUUC-Lch-049732	Latimeria chalumnae	90.77	0.00e+00	919.00
IUUC-Loc-052371	Lepisosteus oculatus	89.23	0.00e+00	909.00
IUUC-Laf-054565	Loxodonta africana	97.69	0.00e+00	936.00
IUUC-Mcc-055522	Macaca mulatta	98.08	0.00e+00	975.00
IUUC-Meu-056754	Macropus eugenii	86.03	7.00e-177	613.00
IUUC-Mga-060095	Meleagris gallopavo	94.66	0.00e+00	637.00
IUUC-Mmr-060839	Microcebus murinus	97.88	0.00e+00	936.00
IUUC-Mdo-062339	Monodelphis domestica	97.24	0.00e+00	756.00
IUUC-Mmu-063638	Mus musculus	96.35	0.00e+00	905.00
IUUC-Mpu-066647	Mustela putorius furo	99.08	0.00e+00	769.00
IUUC-Mlu-067921	Myotis lucifugus	97.14	0.00e+00	892.00
IUUC-Nle-069752	Nomascus leucogenys	98.08	0.00e+00	974.00
IUUC-Opr-070636	Ochotona princeps	82.31	0.00e+00	726.00
IUUC-Ont-071638	Oreochromis niloticus	76.84	0.00e+00	706.00
IUUC-Oan-073417	Ornithorhynchus anatinus	89.81	0.00e+00	887.00
IUUC-Ocu-074620	Oryctolagus cuniculus	96.35	0.00e+00	924.00
IUUC-Ola-087281	Oryzias latipes	78.80	0.00e+00	634.00
IUUC-Olu-087697	Ostreococcus lucimarinus	39.67	4.00e-49	188.00
IUUC-Oga-088448	Otolemur garnettii	97.31	0.00e+00	966.00
IUUC-Oar-090132	Ovis aries	97.12	0.00e+00	934.00
IUUC-Ptr-090696	Pan troglodytes	97.76	0.00e+00	909.00
IUUC-Pan-092124	Papio anubis	97.69	0.00e+00	970.00
IUUC-Psi-093801	Pelodiscus sinensis	95.86	0.00e+00	748.00
IUUC-Pma-094300	Petromyzon marinus	71.54	7.00e-100	356.00
IUUC-Pfo-096330	Poecilia formosa	78.31	0.00e+00	787.00
IUUC-Pab-098191	Pongo abelii	98.27	0.00e+00	976.00
IUUC-Pca-100341	Procavia capensis	96.63	0.00e+00	726.00
IUUC-Pva-103177	Pteropus vampyrus	98.08	0.00e+00	928.00
IUUC-Rno-105048	Rattus norvegicus	95.40	0.00e+00	892.00
IUUC-Sha-107429	Sarcophilus harrisii	95.77	0.00e+00	867.00
IUUC-Sar-113024	Sorex araneus	95.74	0.00e+00	814.00
IUUC-Ssc-115749	Sus scrofa	96.80	7.00e-152	529.00
IUUC-Tgu-117277	Taeniopygia guttata	94.69	0.00e+00	888.00
IUUC-Tru-117844	Takifugu rubripes	78.69	0.00e+00	785.00
IUUC-Tsy-119456	Tarsius syrichta	95.09	0.00e+00	866.00
IUUC-Tni-120251	Tetraodon nigroviridis	74.71	0.00e+00	797.00
IUUC-Tbe-127423	Tupaia belangeri	91.35	0.00e+00	850.00
IUUC-Ttr-128401	Tursiops truncatus	90.80	0.00e+00	790.00
IUUC-Vpa-130549	Vicugna pacos	87.43	8.00e-163	565.00
IUUC-Xtr-131892	Xenopus tropicalis	82.80	0.00e+00	796.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence