iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Vda-129973

Ensembl Protein ID

EGY22825

UniProt Accession

G2X1T9; G2X1T9_VERDV

Genbank Protein ID

EGY22825.1

Protein Name

DOM34-interacting protein

Genbank Nucleotide ID

DS572701

Gene Name

VDAG_04263

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
VDAG_04263	EGY22825	EGY22825

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.00e-41	137.3	423	461
UBD/Beta-Prp	5.80e-85	284.1	566	725

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllks 38
           gH  +v+++++ sd ++l+s+s +g++k+W+++t++++++
   Q: 423  GHRTDVRSVSLsSDdKMLASAS-NGSLKIWNIKTQTCIRT 461
           79999*******7758877777.89***********9875 PP

UBD/Beta-Prp

   S: 13   itcvkfspdksllatgsrdgtikvwdvttgkl..lrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfsp.....sg 106
           i ++kfspd +lla++  d+t+kv+ v++ kl     l+gh+ +v ++++s d+k+++t+s D++i++w l+ g+c  +l gh+ds+l ++f p     +g
   Q: 566  ILSLKFSPDAKLLAVSLLDSTVKVFFVDSLKLklYLNLYGHKLPVLSMDISYDSKLIITSSADKNIRIWGLDFGDCHKALFGHQDSILQVAFVPhnsdgNG 666
           4459*********************9999888768899*********************************************************999999 PP
   S: 107  dklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdl 166
           +++ s+s+dr i+ wd ++ + ++  l+gh+g v+ ++v+ +g+ lvs++ D+ +r+Wd 
   Q: 667  HHFFSASKDRCIKYWDGDKFEQIQ-RLDGHHGEVWAMAVSHSGRTLVSAGHDKSIRVWDE 725
           ************************.*********************************97 PP

Organism

Verticillium dahliae

Protein Sequence
(Fasta)

MVKSYLKYEH TKSFGVVASS TSNLVWTSKD RNGTGAGQVV VAANEEVLSW DIKKGELLSR 60
WRDEKCTLPV TAIAQSKADK DVYAVGYEDG SIRLWDSKIA MVIVNFQGHS SAITHLAFDK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCAGGAGAGT CGGCAAGATG GTCAAGTCAT ACTTGTGAGT GGCTCAGACT GACGTTGTCT 60
TGACGGTCCA CTGACACAAC CATCTTCACA GGAAATACGA ACACACCAAG TCGTTCGGTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0687--Ribonucleoprotein
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR010920--LSM_dom
IPR001163--LSM_dom_euk/arc
IPR007148--SSU_processome_Utp12
IPR016654--U6_snRNA_Lsm2
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF01423--LSM
PF04003--Utp12
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00651--Sm
SM00320--WD40

Gene Ontology

GO:0005829--C:cytosol
GO:0034388--C:Pwp2p-containing subcomplex of 90S preribosome
GO:0032040--C:small-subunit processome
GO:0030515--F:snoRNA binding
GO:0000480--P:endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000447--P:endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000472--P:endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006397--P:mRNA processing

KEGG

vda:VDAG_04263

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000784	Aegilops tauschii	34.74	2.00e-120	425.00
IUUC-Aml-001245	Ailuropoda melanoleuca	38.68	1.00e-162	565.00
IUUC-Atr-002700	Amborella trichopoda	35.03	2.00e-141	494.00
IUUC-Apl-004164	Anas platyrhynchos	38.16	2.00e-123	434.00
IUUC-Aca-004765	Anolis carolinensis	37.47	3.00e-159	553.00
IUUC-Aly-006503	Arabidopsis lyrata	34.43	9.00e-145	506.00
IUUC-Ath-006848	Arabidopsis thaliana	34.63	9.00e-147	512.00
IUUC-Ago-007909	Ashbya gossypii	45.18	0.00e+00	739.00
IUUC-Acl-008238	Aspergillus clavatus	62.58	0.00e+00	1190.00
IUUC-Afl-008544	Aspergillus flavus	61.84	0.00e+00	1159.00
IUUC-Afu-008868	Aspergillus fumigatus	63.19	0.00e+00	1189.00
IUUC-Ani-009367	Aspergillus nidulans	59.92	0.00e+00	1129.00
IUUC-Ang-009732	Aspergillus niger	60.62	0.00e+00	1183.00
IUUC-Aor-010140	Aspergillus oryzae	62.23	0.00e+00	1169.00
IUUC-Ate-010572	Aspergillus terreus	60.33	0.00e+00	1148.00
IUUC-Ame-010956	Astyanax mexicanus	43.88	4.00e-127	447.00
IUUC-Bgr-012296	Blumeria graminis	64.14	0.00e+00	1179.00
IUUC-Bta-012716	Bos taurus	38.20	8.00e-164	569.00
IUUC-Bci-013699	Botrytis cinerea	68.65	0.00e+00	1258.00
IUUC-Bdi-014525	Brachypodium distachyon	35.55	4.00e-137	480.00
IUUC-Bol-015117	Brassica oleracea	36.36	3.00e-147	514.00
IUUC-Bra-016869	Brassica rapa	36.41	7.00e-148	516.00
IUUC-Cel-018570	Caenorhabditis elegans	29.32	7.00e-93	333.00
IUUC-Cja-019425	Callithrix jacchus	37.79	3.00e-167	580.00
IUUC-Cfa-020787	Canis familiaris	38.99	2.00e-162	564.00
IUUC-Cpo-021729	Cavia porcellus	40.00	6.00e-130	456.00
IUUC-Cre-022678	Chlamydomonas reinhardtii	39.89	3.00e-88	318.00
IUUC-Csa-024098	Chlorocebus sabaeus	38.27	1.00e-167	581.00
IUUC-Cho-024495	Choloepus hoffmanni	40.34	4.00e-92	330.00
IUUC-Cin-025245	Ciona intestinalis	34.27	9.00e-91	325.00
IUUC-Cgl-026708	Colletotrichum gloeosporioides	84.24	0.00e+00	1538.00
IUUC-Cne-026835	Cryptococcus neoformans	41.50	3.00e-177	613.00
IUUC-Cme-027162	Cyanidioschyzon merolae	32.87	4.00e-32	132.00
IUUC-Dre-027874	Danio rerio	37.01	3.00e-170	590.00
IUUC-Dno-028905	Dasypus novemcinctus	38.84	2.00e-164	571.00
IUUC-Dor-030383	Dipodomys ordii	33.53	1.00e-62	233.00
IUUC-Dse-031297	Dothistroma septosporum	53.22	0.00e+00	988.00
IUUC-Dme-031956	Drosophila melanogaster	32.46	4.00e-123	433.00
IUUC-Ete-032608	Echinops telfairi	35.04	1.00e-87	315.00
IUUC-Eca-034181	Equus caballus	38.82	3.00e-162	564.00
IUUC-Eeu-034495	Erinaceus europaeus	39.38	1.00e-160	558.00
IUUC-Fca-035994	Felis catus	40.16	2.00e-160	557.00
IUUC-Fal-036611	Ficedula albicollis	42.81	9.00e-123	432.00
IUUC-Fox-037807	Fusarium oxysporum	79.02	0.00e+00	1490.00
IUUC-Fso-038090	Fusarium solani	81.21	0.00e+00	1492.00
IUUC-Gmo-039018	Gadus morhua	35.22	1.00e-88	318.00
IUUC-Ggr-039748	Gaeumannomyces graminis	73.88	0.00e+00	1385.00
IUUC-Gga-040707	Gallus gallus	42.29	1.00e-122	432.00
IUUC-Gac-042334	Gasterosteus aculeatus	32.75	5.00e-75	273.00
IUUC-Gma-043033	Glycine max	35.52	1.00e-142	499.00
IUUC-Ggo-045334	Gorilla gorilla	38.30	3.00e-166	577.00
IUUC-Hsa-046996	Homo sapiens	38.30	3.00e-165	573.00
IUUC-Hvu-047381	Hordeum vulgare	33.61	3.00e-78	284.00
IUUC-Itr-047938	Ictidomys tridecemlineatus	38.22	9.00e-161	558.00
IUUC-Kpa-049185	Komagataella pastoris	41.11	0.00e+00	680.00
IUUC-Lch-050098	Latimeria chalumnae	35.55	2.00e-146	511.00
IUUC-Lpe-050710	Leersia perrieri	34.40	4.00e-131	460.00
IUUC-Loc-052745	Lepisosteus oculatus	37.67	2.00e-161	561.00
IUUC-Lma-053104	Leptosphaeria maculans	60.21	0.00e+00	1113.00
IUUC-Laf-054395	Loxodonta africana	38.30	4.00e-162	563.00
IUUC-Mcc-055077	Macaca mulatta	38.48	4.00e-166	577.00
IUUC-Meu-056418	Macropus eugenii	41.78	8.00e-88	316.00
IUUC-Mor-057031	Magnaporthe oryzae	72.30	0.00e+00	1269.00
IUUC-Mpo-057420	Magnaporthe poae	74.30	0.00e+00	1373.00
IUUC-Mtr-057838	Medicago truncatula	36.97	4.00e-149	520.00
IUUC-Mla-058854	Melampsora laricipopulina	40.74	0.00e+00	632.00
IUUC-Mga-060120	Meleagris gallopavo	40.44	7.00e-122	429.00
IUUC-Mvi-060407	Microbotryum violaceum	45.16	0.00e+00	766.00
IUUC-Mmr-060635	Microcebus murinus	37.84	5.00e-158	550.00
IUUC-Mdo-063023	Monodelphis domestica	37.83	5.00e-162	563.00
IUUC-Mmu-064103	Mus musculus	38.63	9.00e-168	582.00
IUUC-Mac-065569	Musa acuminata	37.29	2.00e-143	501.00
IUUC-Mpu-066462	Mustela putorius furo	38.76	1.00e-162	565.00
IUUC-Mlu-067894	Myotis lucifugus	38.27	3.00e-162	563.00
IUUC-Nfi-068321	Neosartorya fischeri	62.31	0.00e+00	1172.00
IUUC-Ncr-068661	Neurospora crassa	78.12	0.00e+00	1440.00
IUUC-Nle-069409	Nomascus leucogenys	38.00	2.00e-166	577.00
IUUC-Opr-070445	Ochotona princeps	42.52	2.00e-118	418.00
IUUC-Ont-072339	Oreochromis niloticus	38.69	2.00e-170	591.00
IUUC-Oan-073688	Ornithorhynchus anatinus	37.77	7.00e-152	529.00
IUUC-Ocu-074227	Oryctolagus cuniculus	38.43	5.00e-162	563.00
IUUC-Oba-075635	Oryza barthii	34.62	9.00e-127	446.00
IUUC-Obr-076897	Oryza brachyantha	35.45	2.00e-136	478.00
IUUC-Ogl-077555	Oryza glaberrima	34.51	2.00e-126	445.00
IUUC-Ogu-078724	Oryza glumaepatula	34.44	1.00e-127	449.00
IUUC-Oin-080030	Oryza indica	34.93	4.00e-127	447.00
IUUC-Olo-080687	Oryza longistaminata	32.60	6.00e-116	410.00
IUUC-Ome-081867	Oryza meridionalis	34.33	6.00e-127	446.00
IUUC-Oni-082559	Oryza nivara	34.93	3.00e-127	447.00
IUUC-Opu-083332	Oryza punctata	37.40	4.00e-121	427.00
IUUC-Oru-084455	Oryza rufipogon	34.64	1.00e-126	445.00
IUUC-Osa-085793	Oryza sativa	34.64	1.00e-126	445.00
IUUC-Ola-087395	Oryzias latipes	42.54	7.00e-117	413.00
IUUC-Olu-087768	Ostreococcus lucimarinus	42.04	9.00e-106	376.00
IUUC-Oga-088574	Otolemur garnettii	38.67	9.00e-164	568.00
IUUC-Oar-089453	Ovis aries	37.81	3.00e-163	567.00
IUUC-Ptr-090694	Pan troglodytes	38.30	5.00e-165	573.00
IUUC-Pan-092420	Papio anubis	38.37	6.00e-167	579.00
IUUC-Psi-093683	Pelodiscus sinensis	37.24	2.00e-156	544.00
IUUC-Pma-094197	Petromyzon marinus	34.14	3.00e-30	123.00
IUUC-Pno-094783	Phaeosphaeria nodorum	58.05	0.00e+00	1071.00
IUUC-Ppa-095208	Physcomitrella patens	36.24	3.00e-142	497.00
IUUC-Pfo-096299	Poecilia formosa	37.98	9.00e-172	595.00
IUUC-Pab-098706	Pongo abelii	38.49	3.00e-167	580.00
IUUC-Pop-099275	Populus trichocarpa	36.07	2.00e-145	508.00
IUUC-Pca-100796	Procavia capensis	31.79	8.00e-99	353.00
IUUC-Ppe-101861	Prunus persica	36.18	4.00e-146	510.00
IUUC-Pva-103241	Pteropus vampyrus	36.73	5.00e-148	516.00
IUUC-Pgr-103432	Puccinia graminis	40.96	0.00e+00	629.00
IUUC-Ptt-103742	Puccinia triticina	38.79	4.00e-165	573.00
IUUC-Pte-104069	Pyrenophora teres	59.11	0.00e+00	1082.00
IUUC-Pyt-104650	Pyrenophora triticirepentis	59.43	0.00e+00	1092.00
IUUC-Rno-105219	Rattus norvegicus	38.47	5.00e-164	570.00
IUUC-Sce-106271	Saccharomyces cerevisiae	43.49	0.00e+00	729.00
IUUC-Sha-107550	Sarcophilus harrisii	37.53	7.00e-163	566.00
IUUC-Sja-107664	Schizosaccharomyces japonicus	45.08	0.00e+00	736.00
IUUC-Spo-108239	Schizosaccharomyces pombe	45.37	0.00e+00	758.00
IUUC-Ssl-108626	Sclerotinia sclerotiorum	70.56	0.00e+00	1298.00
IUUC-Smo-109477	Selaginella moellendorffii	37.65	8.00e-144	502.00
IUUC-Sit-110000	Setaria italica	34.60	1.00e-124	439.00
IUUC-Sly-111595	Solanum lycopersicum	36.94	3.00e-147	513.00
IUUC-Stu-112516	Solanum tuberosum	36.77	2.00e-143	501.00
IUUC-Sar-113195	Sorex araneus	43.45	3.00e-111	394.00
IUUC-Sbi-114465	Sorghum bicolor	34.61	2.00e-137	481.00
IUUC-Sre-115006	Sporisorium reilianum	39.18	0.00e+00	643.00
IUUC-Ssc-115929	Sus scrofa	37.67	8.00e-159	552.00
IUUC-Tgu-117282	Taeniopygia guttata	36.81	1.00e-153	535.00
IUUC-Tru-118406	Takifugu rubripes	38.27	5.00e-164	570.00
IUUC-Tsy-119170	Tarsius syrichta	37.45	1.00e-158	552.00
IUUC-Tni-119721	Tetraodon nigroviridis	38.42	4.00e-163	566.00
IUUC-Tca-121761	Theobroma cacao	36.60	8.00e-150	522.00
IUUC-Tre-121908	Trichoderma reesei	79.60	0.00e+00	1437.00
IUUC-Tvi-122547	Trichoderma virens	78.96	0.00e+00	1446.00
IUUC-Tae-125496	Triticum aestivum	36.58	3.00e-132	464.00
IUUC-Tur-126811	Triticum urartu	36.00	2.00e-129	454.00
IUUC-Tme-126987	Tuber melanosporum	59.63	0.00e+00	1120.00
IUUC-Tbe-127315	Tupaia belangeri	44.40	4.00e-101	360.00
IUUC-Ttr-129165	Tursiops truncatus	42.23	1.00e-60	226.00
IUUC-Uma-129651	Ustilago maydis	39.98	0.00e+00	656.00
IUUC-Vpa-130163	Vicugna pacos	37.62	5.00e-47	181.00
IUUC-Vvi-131402	Vitis vinifera	35.03	3.00e-145	507.00
IUUC-Xtr-132296	Xenopus tropicalis	41.95	1.00e-122	432.00
IUUC-Xma-133028	Xiphophorus maculatus	38.09	1.00e-172	598.00
IUUC-Yli-134484	Yarrowia lipolytica	45.86	0.00e+00	739.00
IUUC-Zma-135938	Zea mays	34.04	1.00e-134	472.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence