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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Cel-018569
UUCD1 version UUC-CaE-00294
Ensembl Protein ID F55F8.5.1
UniProt Accession P91343; WDR12_CAEEL
Genbank Protein ID CCD71887.1
Protein Name Ribosome biogenesis protein WDR12 homolog
Genbank Nucleotide ID FO081477
Gene Name wdr-12; tag-345; F55F8.5
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
WBGene00018893 F55F8.5.1 F55F8.5.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
microRNA
Protein-protein Interaction
IID
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 1.90e-21 75.5 409 437
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclafsdtllvsGsdDgtikvWD 29
           gH d++ c  ++++l+++Gs D+tik+++
   Q: 409  GHDDRILCATWNEGLIATGSADCTIKIFE 437
           8**********77**************98 PP
   
Organism Caenorhabditis elegans
Functional Description
(View)

Functional Description


     Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.
 Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.
Protein Sequence
(Fasta)
MDLADLMEVE NGDHSINQKH VQITFFSKDE EIPQIPDAVF DVPTGAECDD MNLLLNKTIE 60
ANDGAWKERR FEFLVGETFL RTSLAEFIEE YEVETETILK VECVIGIEAP KPLHDIQAPD 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Cel-018569|E3,WD_repeat|Caenorhabditis elegans
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CAATAGCTCT CAAAAAAGCA AAAATTTATC AAAACATTGA TTTAAATGTT ATAGATTTTC 60
GTTAGTCCCC TTCATACGGT ATTTTTGTTT CCGGTTGAAC CCTCACATCT CCTCTTCTCT 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Cel-018569|E3,WD_repeat|Caenorhabditis elegans
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat
Interpro

IPR012972--NLE
IPR027295--Quinoprotein_ADH-like_fam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF08154--NLE
PF00400--WD40
SMART

SM00320--WD40
Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0000460--P:maturation of 5.8S rRNA
GO:0000470--P:maturation of LSU-rRNA
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
KEGG cel:CELE_F55F8.5
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000532 Aegilops tauschii 24.07 3.00e-27 115.00
IUUC-Aml-001997 Ailuropoda melanoleuca 32.24 5.00e-48 183.00
IUUC-Atr-002544 Amborella trichopoda 22.10 1.00e-24 105.00
IUUC-Apl-003981 Anas platyrhynchos 33.06 1.00e-45 175.00
IUUC-Aca-004370 Anolis carolinensis 33.33 3.00e-54 204.00
IUUC-Aly-006455 Arabidopsis lyrata 23.48 1.00e-28 119.00
IUUC-Ath-006669 Arabidopsis thaliana 23.38 2.00e-25 108.00
IUUC-Ago-007864 Ashbya gossypii 24.72 9.00e-24 103.00
IUUC-Acl-008177 Aspergillus clavatus 25.41 1.00e-23 103.00
IUUC-Afl-008617 Aspergillus flavus 23.74 4.00e-21 94.70
IUUC-Afu-008752 Aspergillus fumigatus 24.82 1.00e-20 92.80
IUUC-Ani-009136 Aspergillus nidulans 25.12 2.00e-23 102.00
IUUC-Ang-009701 Aspergillus niger 24.26 2.00e-17 82.40
IUUC-Aor-009884 Aspergillus oryzae 24.04 1.00e-20 93.20
IUUC-Ate-010472 Aspergillus terreus 24.29 4.00e-09 54.30
IUUC-Ame-011432 Astyanax mexicanus 33.41 5.00e-56 210.00
IUUC-Bgr-012218 Blumeria graminis 25.07 3.00e-19 88.60
IUUC-Bta-012829 Bos taurus 31.31 2.00e-48 184.00
IUUC-Bdi-014351 Brachypodium distachyon 25.11 3.00e-29 121.00
IUUC-Bol-015618 Brassica oleracea 25.00 3.00e-24 105.00
IUUC-Bra-018095 Brassica rapa 26.04 8.00e-26 110.00
IUUC-Cja-019468 Callithrix jacchus 31.37 4.00e-46 177.00
IUUC-Cfa-020471 Canis familiaris 31.28 2.00e-47 181.00
IUUC-Cpo-022260 Cavia porcellus 31.52 1.00e-47 182.00
IUUC-Cre-022614 Chlamydomonas reinhardtii 24.26 2.00e-21 95.10
IUUC-Csa-023989 Chlorocebus sabaeus 31.13 1.00e-45 176.00
IUUC-Cho-024426 Choloepus hoffmanni 30.91 3.00e-33 134.00
IUUC-Cin-025789 Ciona intestinalis 31.75 2.00e-56 211.00
IUUC-Cne-027063 Cryptococcus neoformans 18.28 2.00e-09 55.80
IUUC-Dre-027907 Danio rerio 33.81 2.00e-58 218.00
IUUC-Dno-029225 Dasypus novemcinctus 31.86 6.00e-49 186.00
IUUC-Dor-031082 Dipodomys ordii 26.32 5.00e-14 70.90
IUUC-Dse-031308 Dothistroma septosporum 26.15 5.00e-29 120.00
IUUC-Dme-032189 Drosophila melanogaster 30.43 5.00e-51 193.00
IUUC-Ete-032247 Echinops telfairi 30.39 7.00e-41 160.00
IUUC-Eca-034285 Equus caballus 31.55 3.00e-49 187.00
IUUC-Eeu-035322 Erinaceus europaeus 28.92 3.00e-40 157.00
IUUC-Fca-036114 Felis catus 31.31 1.00e-48 185.00
IUUC-Fal-036891 Ficedula albicollis 33.94 6.00e-43 166.00
IUUC-Gmo-039040 Gadus morhua 31.50 3.00e-56 211.00
IUUC-Gga-040610 Gallus gallus 33.42 2.00e-52 198.00
IUUC-Gac-042117 Gasterosteus aculeatus 32.22 2.00e-53 202.00
IUUC-Gma-043967 Glycine max 25.90 2.00e-31 128.00
IUUC-Ggo-045179 Gorilla gorilla 31.13 6.00e-46 176.00
IUUC-Hsa-046114 Homo sapiens 31.13 2.00e-45 174.00
IUUC-Hvu-047331 Hordeum vulgare 24.35 6.00e-23 100.00
IUUC-Itr-048275 Ictidomys tridecemlineatus 32.52 7.00e-50 189.00
IUUC-Kpa-049304 Komagataella pastoris 27.47 2.00e-28 119.00
IUUC-Lch-050655 Latimeria chalumnae 28.82 2.00e-31 128.00
IUUC-Lpe-051675 Leersia perrieri 25.17 5.00e-30 124.00
IUUC-Loc-052868 Lepisosteus oculatus 31.12 9.00e-55 206.00
IUUC-Lma-053258 Leptosphaeria maculans 23.24 9.00e-20 92.00
IUUC-Laf-053993 Loxodonta africana 31.82 2.00e-49 188.00
IUUC-Mcc-055128 Macaca mulatta 25.24 3.00e-21 94.70
IUUC-Meu-056501 Macropus eugenii 32.93 4.00e-36 144.00
IUUC-Mor-057114 Magnaporthe oryzae 23.68 2.00e-15 75.50
IUUC-Mtr-058367 Medicago truncatula 24.49 3.00e-28 118.00
IUUC-Mla-059107 Melampsora laricipopulina 22.35 1.00e-18 86.70
IUUC-Mga-059745 Meleagris gallopavo 33.50 3.00e-51 194.00
IUUC-Mvi-060362 Microbotryum violaceum 32.75 4.00e-15 74.70
IUUC-Mdo-062257 Monodelphis domestica 32.22 7.00e-53 199.00
IUUC-Mmu-063546 Mus musculus 31.52 5.00e-50 190.00
IUUC-Mac-065540 Musa acuminata 24.36 3.00e-27 115.00
IUUC-Mpu-066284 Mustela putorius furo 31.31 1.00e-48 186.00
IUUC-Mlu-067241 Myotis lucifugus 31.04 4.00e-49 187.00
IUUC-Nfi-068260 Neosartorya fischeri 24.82 2.00e-21 95.50
IUUC-Ncr-068719 Neurospora crassa 20.89 1.00e-10 59.70
IUUC-Nle-068981 Nomascus leucogenys 31.13 2.00e-44 172.00
IUUC-Opr-071218 Ochotona princeps 30.35 2.00e-48 184.00
IUUC-Ont-071646 Oreochromis niloticus 32.94 1.00e-54 206.00
IUUC-Oan-073453 Ornithorhynchus anatinus 32.93 1.00e-55 209.00
IUUC-Ocu-074008 Oryctolagus cuniculus 30.79 5.00e-49 187.00
IUUC-Obr-076721 Oryza brachyantha 24.36 1.00e-29 122.00
IUUC-Ogl-077229 Oryza glaberrima 24.94 2.00e-30 125.00
IUUC-Oin-079683 Oryza indica 25.17 4.00e-31 127.00
IUUC-Ome-081834 Oryza meridionalis 25.29 6.00e-30 124.00
IUUC-Oni-082507 Oryza nivara 24.31 3.00e-30 125.00
IUUC-Opu-083396 Oryza punctata 24.48 2.00e-30 125.00
IUUC-Oru-085220 Oryza rufipogon 24.31 5.00e-30 124.00
IUUC-Osa-085767 Oryza sativa 25.17 4.00e-31 127.00
IUUC-Ola-087420 Oryzias latipes 32.04 2.00e-52 198.00
IUUC-Olu-087740 Ostreococcus lucimarinus 21.35 1.00e-19 89.70
IUUC-Oga-088264 Otolemur garnettii 31.34 9.00e-48 182.00
IUUC-Oar-089335 Ovis aries 30.57 2.00e-47 182.00
IUUC-Ptr-091320 Pan troglodytes 31.13 2.00e-45 174.00
IUUC-Pan-092833 Papio anubis 31.37 4.00e-46 177.00
IUUC-Psi-093504 Pelodiscus sinensis 32.52 8.00e-51 192.00
IUUC-Pma-094189 Petromyzon marinus 32.56 3.00e-49 187.00
IUUC-Pno-094929 Phaeosphaeria nodorum 24.15 9.00e-20 90.10
IUUC-Ppa-095429 Physcomitrella patens 23.41 4.00e-31 127.00
IUUC-Pfo-096337 Poecilia formosa 31.98 2.00e-56 211.00
IUUC-Pab-097571 Pongo abelii 31.37 2.00e-45 175.00
IUUC-Pop-099977 Populus trichocarpa 24.08 2.00e-33 135.00
IUUC-Pca-100394 Procavia capensis 30.22 3.00e-42 164.00
IUUC-Ppe-101848 Prunus persica 25.06 3.00e-27 115.00
IUUC-Pva-102921 Pteropus vampyrus 45.35 1.00e-18 85.90
IUUC-Pgr-103637 Puccinia graminis 23.24 4.00e-20 91.70
IUUC-Ptt-103781 Puccinia triticina 22.47 6.00e-21 94.00
IUUC-Pte-104135 Pyrenophora teres 24.50 9.00e-22 98.60
IUUC-Pyt-104609 Pyrenophora triticirepentis 24.30 4.00e-23 101.00
IUUC-Rno-105114 Rattus norvegicus 30.81 2.00e-49 188.00
IUUC-Sce-106401 Saccharomyces cerevisiae 26.11 9.00e-24 103.00
IUUC-Sha-107122 Sarcophilus harrisii 31.88 3.00e-51 194.00
IUUC-Sja-107766 Schizosaccharomyces japonicus 24.83 9.00e-23 100.00
IUUC-Spo-108134 Schizosaccharomyces pombe 26.32 2.00e-24 105.00
IUUC-Smo-108761 Selaginella moellendorffii 24.71 7.00e-32 130.00
IUUC-Sit-110354 Setaria italica 25.12 3.00e-31 128.00
IUUC-Sly-111023 Solanum lycopersicum 24.32 1.00e-25 109.00
IUUC-Stu-112778 Solanum tuberosum 26.16 5.00e-29 120.00
IUUC-Sar-113596 Sorex araneus 36.78 3.00e-36 144.00
IUUC-Sbi-114193 Sorghum bicolor 25.69 8.00e-31 126.00
IUUC-Ssc-116066 Sus scrofa 31.80 2.00e-49 188.00
IUUC-Tgu-117048 Taeniopygia guttata 33.60 7.00e-46 176.00
IUUC-Tsy-119573 Tarsius syrichta 27.95 4.00e-12 64.30
IUUC-Tni-119820 Tetraodon nigroviridis 32.86 3.00e-52 197.00
IUUC-Tca-121605 Theobroma cacao 24.32 2.00e-32 132.00
IUUC-Tre-121947 Trichoderma reesei 23.60 4.00e-18 84.30
IUUC-Tvi-122481 Trichoderma virens 23.31 2.00e-17 82.40
IUUC-Tae-125861 Triticum aestivum 24.19 2.00e-27 115.00
IUUC-Tur-126586 Triticum urartu 24.35 3.00e-25 108.00
IUUC-Tme-126900 Tuber melanosporum 25.34 8.00e-29 120.00
IUUC-Tbe-127736 Tupaia belangeri 31.71 2.00e-14 72.00
IUUC-Ttr-129041 Tursiops truncatus 28.33 7.00e-39 153.00
IUUC-Vpa-130260 Vicugna pacos 30.83 2.00e-48 184.00
IUUC-Vvi-131009 Vitis vinifera 24.77 6.00e-31 127.00
IUUC-Xtr-132083 Xenopus tropicalis 34.06 7.00e-52 196.00
IUUC-Xma-133094 Xiphophorus maculatus 31.74 1.00e-54 205.00
IUUC-Zma-135509 Zea mays 24.94 2.00e-32 132.00
Created Date 25-Jun-2017

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