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Basic Information Integrated Annotations

Tag Content
UUCD2 ID IUUC-Ath-007533
UUCD1 version UUC-ArT-01410
Ensembl Protein ID AT4G34470.1
UniProt Accession O65674; ASK12_ARATH
Genbank Protein ID CAA18826.1; CAB80164.1; AEE86383.1
Protein Name SKP1-like protein 12
Genbank Nucleotide ID AL023094; AL161585; CP002687
Gene Name ASK12; At4g34470; T4L20.50
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT4G34470 AT4G34470.1 AT4G34470.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
Protein-protein Interaction
iRefIndexPINAHINTMentha
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/SCF/SKP1 3.90e-31 107.9 103 150
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/SCF/SKP1

   S: 1    ksLLdltcktVadmikgktpeeiRktFnienDftpeEeakvReEnqWA 48
    ksL+dltc+tVadmikgktpeeiR tFnienDftpeEe++vR+EnqWA
   Q: 103 KSLFDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWA 150
    89*********************************************9 PP
   

Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description



     Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1 (By similarity). Plays a role during early flowers reproductive development.
Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1 (By similarity). Plays a role during early flowers reproductive development.
Protein Sequence
(Fasta)
MSSKMIVLMS SDGQSFEVEE AVAIQSQTIA HMVEDDCVAD GIPLANVESK ILVKVIEYCK 60
KYHVDEANPI SEEDLNKWDE KFMDLEQSTI FELILAANYL NIKSLFDLTC QTVADMIKGK 120
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Protein Fasta Sequence



>IUUC-Ath-007533|E3,SKP1|Arabidopsis thaliana
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Nucleotide Sequence
(Fasta)
CTAGGGCTTA TAAATACAAA GACGCATAGG GTTTCACAAC TTCATCACCT TAACACAATT 60
TGTTCGCTCT CTAAATTCTT AAATCTTTCA TCAAATTTGC TTCACAGTGA AAAACCTCCT 120
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Nucleotide Fasta Sequence



>IUUC-Ath-007533|E3,SKP1|Arabidopsis thaliana
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Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0833--Ubl conjugation pathway

Interpro

IPR016897--SKP1
IPR001232--SKP1-like
IPR011333--SKP1/BTB/POZ
IPR016072--Skp1_comp_dimer
IPR016073--Skp1_comp_POZ

Pfam

PF01466--Skp1
PF03931--Skp1_POZ

SMART

SM00512--Skp1

Gene Ontology

GO:0005634--C:nucleus
GO:0016567--P:protein ubiquitination
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG ath:AT4G34470
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Cme-027174 Cyanidioschyzon merolae 50.98 2.00e-39 154.00
Created Date 25-Jun-2017

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