iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007079

UUCD1 version

UUC-ArT-00188

Ensembl Protein ID

AT5G43530.1

UniProt Accession

Q9FIY7; SM3L3_ARATH

Genbank Protein ID

BAB11616.1; AED94978.1

Protein Name

Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3

Genbank Nucleotide ID

AB016875; CP002688

Gene Name

At5g43530; K9D7.2

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G43530	AT5G43530.1	AT5G43530.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	3.60e-07	31.5	1040	1080

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadCl.qkwpglknssskefrCPlCr 46
           C+iCle+ +d p+++pC H ++++Cl   w      s    +CP+Cr
   Q: 1040 CPICLESADD-PVLTPCAHRMCRECLlTSW-----RSPSCGLCPICR 1080
           **********.999***********9999*.....5777779****8 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Possesses intrinsic ATP-dependent nucleosome-remodeling activity. This activity may be required for DNA repair (By similarity).

Protein Sequence
(Fasta)

MAIVDDAEMR LTESEAVSSS DDRKIVADTP DFIDESSLVI RTTTGVRISA LPAEQSLVDS 60
DGSNSEVTLP AKDEVISDGF TCVNKEIVES DSFREQNLEI GEPDLDVENR KEAMIIDSIE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCCCACTCTC ATCCTCCATT TTCGCCTCTC TCTTCCCTCT CCTCCTTTCT TCCCAAATGG 60
CCATTGTTGA TGACGCAGAG ATGCGGTTAA CCGAATCCGA AGCTGTTTCG AGTTCCGATG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0067--ATP-binding
KW-0156--Chromatin regulator
KW-0181--Complete proteome
KW-0227--DNA damage
KW-0234--DNA repair
KW-0347--Helicase
KW-0378--Hydrolase
KW-0479--Metal-binding
KW-0547--Nucleotide-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR014905--HIRAN
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
IPR018957--Znf_C3HC4_RING-type
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00271--Helicase_C
PF08797--HIRAN
PF00176--SNF2_N
PF00097--zf-C3HC4

SMART

SM00487--DEXDc
SM00490--HELICc
SM00910--HIRAN
SM00184--RING

Gene Ontology

GO:0009941--C:chloroplast envelope
GO:0005634--C:nucleus
GO:0005524--F:ATP binding
GO:0004386--F:helicase activity
GO:0003676--F:nucleic acid binding
GO:0008270--F:zinc ion binding
GO:0016569--P:covalent chromatin modification
GO:0006281--P:DNA repair

KEGG

ath:AT5G43530

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000167	Aegilops tauschii	60.61	0.00e+00	1103.00
IUUC-Atr-003058	Amborella trichopoda	64.25	0.00e+00	1192.00
IUUC-Aly-005600	Arabidopsis lyrata	90.76	0.00e+00	2263.00
IUUC-Ago-007997	Ashbya gossypii	32.74	5.00e-103	368.00
IUUC-Acl-008022	Aspergillus clavatus	32.61	7.00e-133	468.00
IUUC-Ang-009785	Aspergillus niger	34.76	1.00e-137	483.00
IUUC-Bdi-014496	Brachypodium distachyon	58.60	0.00e+00	1083.00
IUUC-Bol-015995	Brassica oleracea	74.83	0.00e+00	1838.00
IUUC-Bra-017004	Brassica rapa	86.07	0.00e+00	1660.00
IUUC-Cne-026886	Cryptococcus neoformans	33.92	2.00e-145	509.00
IUUC-Dor-030651	Dipodomys ordii	31.61	6.00e-79	288.00
IUUC-Dse-031471	Dothistroma septosporum	33.26	1.00e-138	487.00
IUUC-Dme-031815	Drosophila melanogaster	31.38	2.00e-69	257.00
IUUC-Gma-042857	Glycine max	61.88	0.00e+00	1176.00
IUUC-Hvu-047747	Hordeum vulgare	60.90	0.00e+00	1114.00
IUUC-Kpa-049087	Komagataella pastoris	33.87	4.00e-103	369.00
IUUC-Lpe-051123	Leersia perrieri	58.32	0.00e+00	1165.00
IUUC-Lma-052956	Leptosphaeria maculans	33.30	2.00e-131	462.00
IUUC-Mtr-058194	Medicago truncatula	60.89	0.00e+00	1122.00
IUUC-Mac-064548	Musa acuminata	58.46	0.00e+00	1076.00
IUUC-Oba-075316	Oryza barthii	61.06	0.00e+00	1135.00
IUUC-Obr-076834	Oryza brachyantha	59.75	0.00e+00	1165.00
IUUC-Ogl-077508	Oryza glaberrima	62.91	0.00e+00	1151.00
IUUC-Ogu-078083	Oryza glumaepatula	61.17	0.00e+00	1154.00
IUUC-Oin-079893	Oryza indica	63.02	0.00e+00	1170.00
IUUC-Olo-080615	Oryza longistaminata	63.13	0.00e+00	1176.00
IUUC-Oni-082773	Oryza nivara	61.28	0.00e+00	1156.00
IUUC-Opu-083675	Oryza punctata	62.69	0.00e+00	1172.00
IUUC-Oru-084543	Oryza rufipogon	61.06	0.00e+00	1151.00
IUUC-Pop-099537	Populus trichocarpa	68.94	0.00e+00	1343.00
IUUC-Ppe-102107	Prunus persica	68.20	0.00e+00	1337.00
IUUC-Pte-104242	Pyrenophora teres	36.52	3.00e-127	449.00
IUUC-Pyt-104728	Pyrenophora triticirepentis	36.39	6.00e-127	447.00
IUUC-Sce-106396	Saccharomyces cerevisiae	34.07	5.00e-107	382.00
IUUC-Sja-107985	Schizosaccharomyces japonicus	35.54	8.00e-142	497.00
IUUC-Sit-110795	Setaria italica	61.96	0.00e+00	1069.00
IUUC-Sly-111031	Solanum lycopersicum	71.24	0.00e+00	1378.00
IUUC-Stu-112600	Solanum tuberosum	71.35	0.00e+00	1380.00
IUUC-Sbi-114616	Sorghum bicolor	59.80	0.00e+00	1085.00
IUUC-Tca-121146	Theobroma cacao	64.19	0.00e+00	1436.00
IUUC-Tae-125036	Triticum aestivum	61.07	0.00e+00	1111.00
IUUC-Tur-125999	Triticum urartu	57.50	0.00e+00	1056.00
IUUC-Uma-129629	Ustilago maydis	31.20	4.00e-125	442.00
IUUC-Vvi-131508	Vitis vinifera	71.06	0.00e+00	1391.00
IUUC-Yli-134588	Yarrowia lipolytica	33.84	2.00e-100	360.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence