iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

   S: 3    tdsvtclaf..sdtllvsGsdDgtikvWD 29
           +++v +l++  +dt+l++Gs Dgti ++D
   Q: 305  KGPVLSLKWsgTDTYLAAGSADGTITLFD 333
           578******9888***************9 PP

Organism

Schizosaccharomyces pombe

Functional Description
(View)

Component of the set3 histone deacetylase complex.

Protein Sequence
(Fasta)

MDTNQVNYII WRYLKECGYS HTKFAFERET GIQNLDKQWG STCQVGALVE ILQKGLQYVE 60
LEKHYVDNHS SNEEASKTSI DGESLVNENP CKLPFYLTVP HICETTLTKA DSTNGFCEHN 120

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Nucleotide Sequence
(Fasta)

CTAAAAACCG TCTCAATGGG AATTCGTCGA CAATCCTTCA AGTTAAATCC GTATTGACAG 60
GAAAAGAAAG AAAATAGAAG ACTGTTGAGG TTTTAAGTGA AACTCGTTGA CAGACCTTAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0156--Chromatin regulator
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0677--Repeat
KW-0804--Transcription
KW-0805--Transcription regulation
KW-0853--WD repeat

Interpro

IPR006594--LisH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50896--LISH
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08513--LisH
PF00400--WD40

SMART

SM00667--LisH
SM00320--WD40

Gene Ontology

GO:0005829--C:cytosol
GO:0005634--C:nucleus
GO:0070210--C:Rpd3L-Expanded complex
GO:0034967--C:Set3 complex
GO:0003714--F:transcription corepressor activity
GO:0070869--P:heterochromatin assembly involved in chromatin silencing
GO:0016575--P:histone deacetylation
GO:0000122--P:negative regulation of transcription from RNA polymerase II promoter
GO:0006357--P:regulation of transcription from RNA polymerase II promoter
GO:0006351--P:transcription, DNA-templated

KEGG

spo:SPCC1235.09

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Cgl-026703	Colletotrichum gloeosporioides	23.64	2.00e-10	58.50
IUUC-Ggr-039769	Gaeumannomyces graminis	25.97	5.00e-15	73.90
IUUC-Kpa-049338	Komagataella pastoris	20.77	1.00e-16	79.00
IUUC-Mor-056992	Magnaporthe oryzae	28.12	1.00e-15	76.30
IUUC-Ncr-068945	Neurospora crassa	29.41	3.00e-11	62.00
IUUC-Oin-079515	Oryza indica	27.88	4.00e-16	78.20
IUUC-Sce-106132	Saccharomyces cerevisiae	23.17	3.00e-15	74.70
IUUC-Sja-107844	Schizosaccharomyces japonicus	30.58	2.00e-62	231.00
IUUC-Tme-127126	Tuber melanosporum	24.81	2.00e-16	78.60

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence