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Basic Information Integrated Annotations

Tag Content
UUCD2 ID IUUC-Sce-106411
Ensembl Protein ID YBR234C
UniProt Accession P38328; D6VQN0; ARPC1_YEAST
Genbank Protein ID CAA85197.1; AAT92777.1; DAA07350.1
Protein Name Actin-related protein 2/3 complex subunit 1; Arp2/3 complex 41 kDa subunit; p41-ARC
Genbank Nucleotide ID Z36103; AY692758; BK006936
Gene Name ARC40; YBR234C; YBR1532
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
YBR234C YBR234C YBR234C
Annotation
mRNA Expression
GEOFFGED
Protein-protein Interaction
IIDiRefIndexHINTMentha
Post-translational Modifications (PTMs)
CPLMdbPAFBioGRID
Protein Expression/Proteomics
GPMDB
Status Reviewed
Details
Family Domain References (PMIDs)
UBD/Beta-Prp Beta-Prp 21070969
Classification
Family E-value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 4.30e-14 50.6 154 181
UBD/Beta-Prp 1.00e-51 174.3 19 342
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 4    dsvtclaf..sdtllvsGsdDgtikvWD 29
    + ++cl++ ++ ll++G+ Dg ++v++
   Q: 154 STINCLSWhaNGVLLAAGGTDGFMRVFS 181
    78*******7779************986 PP
   


   UBD/Beta-Prp

   S: 10   ksvitcvkfspdksllatgsrdgti..kvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvw.dls..tgkcvhtlkghedsvlslsfsps 105
    k++i++++fs+dks+la++++++++ +v ++t++ l+++l++h++++tav++s +g +vt+s+Dr+++vw +ls t+k++ +l + ++ ++s+++ p+
   Q: 19 KAPIYSHCFSQDKSILAVTCETDCLvyRVSNNTPPVLFATLKDHDKTITAVDISIHG-RIVTCSQDRNAYVWePLSdgTYKPTLVLLRINRAATSVTWAPN 118
    6799********************99******************************9.9*************766678999999999************** PP
   S: 106 gdklvsGshdrtirv..wdletgqclee.tlsghdgvvncvvvhpdgnllvsGslDrtvrlWdl....................ktgkllrtltgghtdsv 183
    g+k+++Gs+ r+i v +++e+++++++ ++++ ++++nc+++h +g ll++G++D+++r+++ ++g+l+r++ ++ +++
   Q: 119 GYKFAVGSSARIIAVcyYEHENNWWVSKhIKKPIKSTINCLSWHANGVLLAAGGTDGFMRVFSGfikgldskesvagspwgqkfPFGCLIREW--YQGSYI 217
    **************************999****************************************************************..689*** PP
   S: 184 yslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgs..sDgsiri.....W....dlrsgdllktlqlhn......... 264
    + ++++s++++++++++dgt++++d+q+ v+++n+ + +++ ++ nd+ +v+g+ ++++++ W +l+++d++k+ +l++
   Q: 218 HDVEWRSQMERIAYVAHDGTLNVVDYQSP--VQSVNAPEGLPYRSLVWINDHEIVCGGysCHPVLFSeasegWkfakNLDKSDNNKSSALTAsgntdelsg 316
    **************************999..9*************************99899999988777789999999999999988888777777777 PP
   S: 265 .....ssvisvav.....lsfgdnvl 280
    s++ +a+ l+++++v
   Q: 317 nndesSTFGISALrkfkeLDLKGKVS 342
    77664333333335555555555554 PP
   

Organism Saccharomyces cerevisiae
Functional Description
(View)

Functional Description



     Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.
Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.
Protein Sequence
(Fasta)
MSFSNSKDKS VVAVYKLVKA PIYSHCFSQD KSILAVTCET DCLVYRVSNN TPPVLFATLK 60
DHDKTITAVD ISIHGRIVTC SQDRNAYVWE PLSDGTYKPT LVLLRINRAA TSVTWAPNGY 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Sce-106411|UBD,Beta-Prp;E3,WD_repeat|Saccharomyces cerevisiae
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATGTCATTTT CCAATTCTAA AGACAAGTCC GTTGTTGCCG TCTACAAGCT GGTCAAAGCG 60
CCAATCTACT CTCATTGCTT TTCTCAAGAT AAATCTATTT TAGCCGTTAC ATGCGAAACA 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Sce-106411|UBD,Beta-Prp;E3,WD_repeat|Saccharomyces cerevisiae
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0009--Actin-binding
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR017383--ARPC1
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0030479--C:actin cortical patch
GO:0005885--C:Arp2/3 protein complex
GO:0051015--F:actin filament binding
GO:0043130--F:ubiquitin binding
GO:0007015--P:actin filament organization
GO:0045010--P:actin nucleation
GO:0034314--P:Arp2/3 complex-mediated actin nucleation

KEGG sce:YBR234C
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000669 Aegilops tauschii 34.60 7.00e-41 159.00
IUUC-Aml-002044 Ailuropoda melanoleuca 37.20 5.00e-63 232.00
IUUC-Atr-002844 Amborella trichopoda 41.07 5.00e-41 159.00
IUUC-Apl-003325 Anas platyrhynchos 37.37 7.00e-65 238.00
IUUC-Aca-004736 Anolis carolinensis 37.04 3.00e-65 239.00
IUUC-Aly-005532 Arabidopsis lyrata 34.64 1.00e-54 204.00
IUUC-Ath-006683 Arabidopsis thaliana 34.38 7.00e-53 199.00
IUUC-Ago-007966 Ashbya gossypii 69.07 2.00e-157 546.00
IUUC-Acl-008334 Aspergillus clavatus 41.84 1.00e-82 297.00
IUUC-Afl-008485 Aspergillus flavus 42.66 2.00e-76 278.00
IUUC-Afu-008780 Aspergillus fumigatus 44.53 3.00e-86 309.00
IUUC-Ani-009417 Aspergillus nidulans 43.80 7.00e-84 301.00
IUUC-Ang-009543 Aspergillus niger 43.42 3.00e-83 299.00
IUUC-Aor-010234 Aspergillus oryzae 41.58 2.00e-77 280.00
IUUC-Ate-010386 Aspergillus terreus 43.42 1.00e-83 301.00
IUUC-Ame-011852 Astyanax mexicanus 37.89 2.00e-64 237.00
IUUC-Bgr-012192 Blumeria graminis 41.42 2.00e-78 283.00
IUUC-Bta-012530 Bos taurus 37.20 1.00e-62 231.00
IUUC-Bci-013616 Botrytis cinerea 43.39 7.00e-80 288.00
IUUC-Bdi-014632 Brachypodium distachyon 33.33 1.00e-48 184.00
IUUC-Bol-016274 Brassica oleracea 35.26 3.00e-53 200.00
IUUC-Bra-016790 Brassica rapa 34.65 3.00e-52 196.00
IUUC-Cel-018122 Caenorhabditis elegans 37.20 1.00e-62 231.00
IUUC-Cja-019362 Callithrix jacchus 37.02 4.00e-64 236.00
IUUC-Cfa-020167 Canis familiaris 36.76 2.00e-63 234.00
IUUC-Cpo-021933 Cavia porcellus 37.44 3.00e-64 236.00
IUUC-Cre-022590 Chlamydomonas reinhardtii 32.68 5.00e-27 112.00
IUUC-Csa-023277 Chlorocebus sabaeus 37.17 5.00e-65 239.00
IUUC-Cho-024449 Choloepus hoffmanni 71.88 8.00e-09 52.40
IUUC-Cin-025186 Ciona intestinalis 37.57 5.00e-62 229.00
IUUC-Csv-026275 Ciona savignyi 36.48 2.00e-59 221.00
IUUC-Cgl-026732 Colletotrichum gloeosporioides 42.48 9.00e-81 291.00
IUUC-Cne-026926 Cryptococcus neoformans 37.00 4.00e-70 256.00
IUUC-Dre-028057 Danio rerio 37.89 2.00e-64 237.00
IUUC-Dno-029092 Dasypus novemcinctus 37.50 2.00e-62 231.00
IUUC-Dor-030391 Dipodomys ordii 37.20 5.00e-63 232.00
IUUC-Dse-031574 Dothistroma septosporum 42.45 1.00e-82 297.00
IUUC-Dme-031907 Drosophila melanogaster 38.40 5.00e-69 252.00
IUUC-Ete-032299 Echinops telfairi 36.39 2.00e-61 227.00
IUUC-Eca-034074 Equus caballus 36.76 1.00e-63 234.00
IUUC-Eeu-035041 Erinaceus europaeus 29.67 2.00e-19 88.20
IUUC-Fca-036154 Felis catus 37.20 5.00e-63 232.00
IUUC-Fal-037279 Ficedula albicollis 37.37 4.00e-65 239.00
IUUC-Fox-037842 Fusarium oxysporum 43.95 7.00e-85 305.00
IUUC-Fso-038276 Fusarium solani 43.80 1.00e-84 304.00
IUUC-Gmo-038608 Gadus morhua 37.23 2.00e-64 237.00
IUUC-Ggr-039762 Gaeumannomyces graminis 43.39 1.00e-82 297.00
IUUC-Gga-040189 Gallus gallus 36.94 4.00e-65 239.00
IUUC-Gac-042536 Gasterosteus aculeatus 37.47 7.00e-63 232.00
IUUC-Gma-043227 Glycine max 34.63 2.00e-50 191.00
IUUC-Ggo-045355 Gorilla gorilla 26.18 1.00e-32 131.00
IUUC-Hsa-046309 Homo sapiens 37.20 5.00e-63 232.00
IUUC-Hvu-047456 Hordeum vulgare 27.59 3.00e-11 59.30
IUUC-Itr-047864 Ictidomys tridecemlineatus 37.20 5.00e-63 232.00
IUUC-Kpa-049288 Komagataella pastoris 45.24 5.00e-91 325.00
IUUC-Lch-050427 Latimeria chalumnae 36.13 6.00e-62 229.00
IUUC-Lpe-050869 Leersia perrieri 33.78 6.00e-50 189.00
IUUC-Loc-052532 Lepisosteus oculatus 35.53 3.00e-61 226.00
IUUC-Lma-053109 Leptosphaeria maculans 44.36 3.00e-85 306.00
IUUC-Laf-054271 Loxodonta africana 36.94 1.00e-62 231.00
IUUC-Mcc-054857 Macaca mulatta 37.20 1.00e-62 231.00
IUUC-Meu-056302 Macropus eugenii 35.28 2.00e-61 227.00
IUUC-Mor-057167 Magnaporthe oryzae 43.68 4.00e-83 299.00
IUUC-Mtr-057659 Medicago truncatula 33.33 7.00e-53 198.00
IUUC-Mla-058886 Melampsora laricipopulina 39.25 5.00e-73 266.00
IUUC-Mga-059327 Meleagris gallopavo 36.94 4.00e-65 239.00
IUUC-Mvi-060302 Microbotryum violaceum 35.88 9.00e-65 238.00
IUUC-Mmr-060765 Microcebus murinus 37.20 5.00e-63 232.00
IUUC-Mdo-062326 Monodelphis domestica 36.25 4.00e-62 229.00
IUUC-Mmu-063819 Mus musculus 36.94 2.00e-62 231.00
IUUC-Mac-064632 Musa acuminata 33.59 3.00e-51 193.00
IUUC-Mpu-066247 Mustela putorius furo 35.43 1.00e-60 224.00
IUUC-Mlu-067184 Myotis lucifugus 37.20 4.00e-63 233.00
IUUC-Nfi-068383 Neosartorya fischeri 44.27 3.00e-86 309.00
IUUC-Ncr-068777 Neurospora crassa 45.79 5.00e-89 318.00
IUUC-Nle-069900 Nomascus leucogenys 37.02 5.00e-64 236.00
IUUC-Opr-070386 Ochotona princeps 40.76 7.00e-59 218.00
IUUC-Ont-072444 Oreochromis niloticus 36.97 1.00e-63 234.00
IUUC-Oan-073139 Ornithorhynchus anatinus 37.20 3.00e-62 229.00
IUUC-Ocu-074340 Oryctolagus cuniculus 37.20 5.00e-63 232.00
IUUC-Oba-075379 Oryza barthii 32.97 9.00e-48 182.00
IUUC-Obr-076404 Oryza brachyantha 32.73 2.00e-49 187.00
IUUC-Ogl-077409 Oryza glaberrima 30.37 2.00e-43 167.00
IUUC-Ogu-078759 Oryza glumaepatula 32.97 1.00e-47 182.00
IUUC-Oin-079118 Oryza indica 32.97 5.00e-48 182.00
IUUC-Olo-081055 Oryza longistaminata 37.45 1.00e-43 167.00
IUUC-Ome-081281 Oryza meridionalis 32.70 3.00e-47 180.00
IUUC-Oni-083043 Oryza nivara 32.97 9.00e-48 182.00
IUUC-Opu-083392 Oryza punctata 29.75 2.00e-35 140.00
IUUC-Oru-084839 Oryza rufipogon 32.97 9.00e-48 182.00
IUUC-Osa-085377 Oryza sativa 32.20 7.00e-48 182.00
IUUC-Ola-087274 Oryzias latipes 35.96 6.00e-55 205.00
IUUC-Oga-088016 Otolemur garnettii 36.94 4.00e-63 233.00
IUUC-Oar-090122 Ovis aries 36.76 5.00e-63 233.00
IUUC-Ptr-091548 Pan troglodytes 37.20 5.00e-63 232.00
IUUC-Pan-091727 Papio anubis 36.39 3.00e-63 233.00
IUUC-Psi-093767 Pelodiscus sinensis 37.37 1.00e-65 241.00
IUUC-Pma-094124 Petromyzon marinus 36.01 1.00e-64 238.00
IUUC-Pno-095031 Phaeosphaeria nodorum 44.50 4.00e-84 302.00
IUUC-Ppa-095858 Physcomitrella patens 37.24 1.00e-58 218.00
IUUC-Pfo-097107 Poecilia formosa 34.12 2.00e-54 204.00
IUUC-Pab-098238 Pongo abelii 35.84 2.00e-63 234.00
IUUC-Pop-098954 Populus trichocarpa 33.33 9.00e-36 141.00
IUUC-Pca-100580 Procavia capensis 35.25 4.00e-60 223.00
IUUC-Ppe-101681 Prunus persica 33.60 1.00e-51 195.00
IUUC-Pva-102908 Pteropus vampyrus 40.06 2.00e-55 207.00
IUUC-Pgr-103309 Puccinia graminis 37.47 4.00e-68 249.00
IUUC-Ptt-103959 Puccinia triticina 36.59 9.00e-69 251.00
IUUC-Pte-104384 Pyrenophora teres 44.74 3.00e-79 286.00
IUUC-Pyt-104686 Pyrenophora triticirepentis 44.68 6.00e-80 288.00
IUUC-Rno-105008 Rattus norvegicus 41.30 2.00e-60 223.00
IUUC-Sha-106691 Sarcophilus harrisii 36.72 3.00e-62 230.00
IUUC-Sja-107792 Schizosaccharomyces japonicus 39.89 6.00e-76 275.00
IUUC-Spo-108053 Schizosaccharomyces pombe 39.58 6.00e-74 269.00
IUUC-Ssl-108606 Sclerotinia sclerotiorum 43.39 1.00e-79 287.00
IUUC-Smo-108836 Selaginella moellendorffii 36.36 4.00e-57 213.00
IUUC-Sit-110150 Setaria italica 32.82 1.00e-50 191.00
IUUC-Sly-111048 Solanum lycopersicum 35.68 1.00e-53 201.00
IUUC-Sar-113599 Sorex araneus 46.81 2.00e-53 200.00
IUUC-Sbi-114685 Sorghum bicolor 32.99 2.00e-45 174.00
IUUC-Sre-115090 Sporisorium reilianum 42.76 4.00e-66 243.00
IUUC-Ssc-115851 Sus scrofa 37.20 4.00e-63 233.00
IUUC-Tgu-116701 Taeniopygia guttata 37.37 4.00e-65 239.00
IUUC-Tru-118343 Takifugu rubripes 36.78 2.00e-63 233.00
IUUC-Tsy-119515 Tarsius syrichta 69.70 7.00e-37 145.00
IUUC-Tni-119844 Tetraodon nigroviridis 35.53 1.00e-54 204.00
IUUC-Tca-121645 Theobroma cacao 33.68 5.00e-49 186.00
IUUC-Tre-122045 Trichoderma reesei 44.06 7.00e-85 305.00
IUUC-Tvi-122523 Trichoderma virens 43.80 1.00e-82 298.00
IUUC-Tae-123562 Triticum aestivum 34.42 4.00e-47 179.00
IUUC-Tur-126640 Triticum urartu 32.95 1.00e-45 174.00
IUUC-Tme-127018 Tuber melanosporum 41.99 2.00e-78 283.00
IUUC-Tbe-127321 Tupaia belangeri 41.61 8.00e-61 224.00
IUUC-Ttr-128178 Tursiops truncatus 40.66 7.00e-61 225.00
IUUC-Uma-129423 Ustilago maydis 35.92 1.00e-68 251.00
IUUC-Vda-129706 Verticillium dahliae 43.68 5.00e-83 298.00
IUUC-Vvi-131647 Vitis vinifera 34.65 1.00e-51 194.00
IUUC-Xtr-131770 Xenopus tropicalis 37.70 9.00e-65 238.00
IUUC-Xma-133435 Xiphophorus maculatus 34.12 2.00e-54 204.00
IUUC-Yli-134471 Yarrowia lipolytica 47.00 2.00e-93 333.00
IUUC-Zma-135615 Zea mays 32.34 2.00e-49 187.00
Created Date 25-Jun-2017

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