iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Dre-028377

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

CCR4-NOT transcription complex, subunit 4b

Genbank Nucleotide ID

CR792454

Gene Name

cnot4b

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSDARG00000007639.6	ENSDART00000022646.6	ENSDARP00000016859.6

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/RING/RING	44.90	2.00e-48	189.00	IUUC-Sce-106312

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Danio rerio

Protein Sequence
(Fasta)

MSCSPEVKED PMECPLCMEP LEIDDVNFFP CTCGYQICRF CWHRIRTDEN GLCPACRKPY 60
PEDPAVYKPL SQEELQRIKN EKKQKQNERK QKITENRKHL SSVRVVQRNL VFVVGLSQRL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AATGTAAGAT GGTGGTTAGG AGGCACTGTC GCTCTACAGA GAGGCTGTAA CACACAAGAC 60
TTGGTGTTTT CGCATCAAAT CACACAGGAG CAGGGACAAA CCATCCCAGG AATTTATACT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0694--RNA-binding
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR034261--CNOT4_RRM
IPR012677--Nucleotide-bd_a/b_plait
IPR000504--RRM_dom
IPR003954--RRM_dom_euk
IPR000571--Znf_CCCH
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50102--RRM
PS50103--ZF_C3H1
PS50089--ZF_RING_2

Pfam

PF00076--RRM_1

SMART

SM00361--RRM_1

Gene Ontology

GO:0030014--C:CCR4-NOT complex
GO:0000166--F:nucleotide binding
GO:0003723--F:RNA binding
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000464	Aegilops tauschii	42.04	1.00e-53	205.00
IUUC-Aml-002384	Ailuropoda melanoleuca	67.49	0.00e+00	890.00
IUUC-Atr-002462	Amborella trichopoda	46.49	3.00e-61	231.00
IUUC-Apl-003756	Anas platyrhynchos	71.13	0.00e+00	1030.00
IUUC-Aca-004643	Anolis carolinensis	70.63	0.00e+00	1014.00
IUUC-Aly-006093	Arabidopsis lyrata	39.36	2.00e-54	207.00
IUUC-Ath-007371	Arabidopsis thaliana	41.67	2.00e-54	207.00
IUUC-Ago-007799	Ashbya gossypii	48.90	5.00e-56	212.00
IUUC-Acl-008077	Aspergillus clavatus	37.18	2.00e-40	162.00
IUUC-Afl-008720	Aspergillus flavus	38.03	7.00e-45	177.00
IUUC-Afu-008905	Aspergillus fumigatus	37.55	9.00e-42	166.00
IUUC-Ani-009264	Aspergillus nidulans	38.24	7.00e-26	112.00
IUUC-Ang-009537	Aspergillus niger	38.03	2.00e-44	175.00
IUUC-Aor-010123	Aspergillus oryzae	34.05	7.00e-27	117.00
IUUC-Ate-010409	Aspergillus terreus	38.89	7.00e-45	177.00
IUUC-Ame-011538	Astyanax mexicanus	81.27	0.00e+00	1110.00
IUUC-Bgr-012062	Blumeria graminis	42.37	3.00e-54	208.00
IUUC-Bta-012419	Bos taurus	64.64	0.00e+00	729.00
IUUC-Bci-013633	Botrytis cinerea	41.28	5.00e-53	203.00
IUUC-Bdi-014913	Brachypodium distachyon	42.92	5.00e-54	206.00
IUUC-Bol-016407	Brassica oleracea	44.34	8.00e-57	215.00
IUUC-Bra-017755	Brassica rapa	44.80	4.00e-57	216.00
IUUC-Cel-018123	Caenorhabditis elegans	58.80	4.00e-85	309.00
IUUC-Cja-019705	Callithrix jacchus	65.51	0.00e+00	902.00
IUUC-Cfa-020440	Canis familiaris	66.01	0.00e+00	907.00
IUUC-Cpo-022091	Cavia porcellus	86.35	8.00e-141	493.00
IUUC-Cre-022872	Chlamydomonas reinhardtii	34.72	1.00e-11	65.10
IUUC-Csa-024202	Chlorocebus sabaeus	65.80	0.00e+00	900.00
IUUC-Cho-024410	Choloepus hoffmanni	96.26	2.00e-97	350.00
IUUC-Cin-025558	Ciona intestinalis	70.59	3.00e-111	395.00
IUUC-Cgl-026687	Colletotrichum gloeosporioides	44.87	2.00e-55	211.00
IUUC-Cne-027084	Cryptococcus neoformans	37.40	1.00e-43	172.00
IUUC-Cme-027148	Cyanidioschyzon merolae	30.43	1.00e-22	101.00
IUUC-Dno-029100	Dasypus novemcinctus	66.09	0.00e+00	906.00
IUUC-Dor-030310	Dipodomys ordii	94.32	8.00e-117	414.00
IUUC-Dse-031514	Dothistroma septosporum	41.42	4.00e-48	186.00
IUUC-Dme-031735	Drosophila melanogaster	66.20	1.00e-105	378.00
IUUC-Ete-033091	Echinops telfairi	65.55	0.00e+00	859.00
IUUC-Eca-033506	Equus caballus	65.92	0.00e+00	906.00
IUUC-Eeu-034506	Erinaceus europaeus	62.34	0.00e+00	652.00
IUUC-Fca-036033	Felis catus	67.36	0.00e+00	738.00
IUUC-Fal-037540	Ficedula albicollis	70.94	0.00e+00	1041.00
IUUC-Fox-037944	Fusarium oxysporum	44.07	1.00e-57	218.00
IUUC-Fso-038172	Fusarium solani	41.53	1.00e-46	182.00
IUUC-Gmo-039211	Gadus morhua	69.34	0.00e+00	864.00
IUUC-Ggr-040096	Gaeumannomyces graminis	46.61	6.00e-61	230.00
IUUC-Gga-040487	Gallus gallus	71.41	0.00e+00	1036.00
IUUC-Gac-042294	Gasterosteus aculeatus	72.66	0.00e+00	1007.00
IUUC-Gma-043229	Glycine max	44.58	3.00e-56	213.00
IUUC-Ggo-044950	Gorilla gorilla	63.60	0.00e+00	779.00
IUUC-Hsa-046666	Homo sapiens	67.42	0.00e+00	733.00
IUUC-Hvu-047405	Hordeum vulgare	42.48	1.00e-53	205.00
IUUC-Itr-047888	Ictidomys tridecemlineatus	93.96	8.00e-141	492.00
IUUC-Kpa-049260	Komagataella pastoris	46.49	6.00e-54	205.00
IUUC-Lch-050203	Latimeria chalumnae	71.38	0.00e+00	993.00
IUUC-Lpe-051195	Leersia perrieri	43.23	9.00e-53	202.00
IUUC-Loc-052886	Lepisosteus oculatus	75.86	0.00e+00	1043.00
IUUC-Lma-053073	Leptosphaeria maculans	42.36	2.00e-51	197.00
IUUC-Laf-053490	Loxodonta africana	66.01	0.00e+00	901.00
IUUC-Mcc-055724	Macaca mulatta	65.96	0.00e+00	907.00
IUUC-Meu-056787	Macropus eugenii	61.17	1.00e-116	414.00
IUUC-Mor-056921	Magnaporthe oryzae	46.19	2.00e-59	223.00
IUUC-Mpo-057616	Magnaporthe poae	46.19	7.00e-60	225.00
IUUC-Mtr-058426	Medicago truncatula	42.86	4.00e-53	203.00
IUUC-Mla-059146	Melampsora laricipopulina	41.28	2.00e-45	177.00
IUUC-Mga-059372	Meleagris gallopavo	71.00	0.00e+00	1030.00
IUUC-Mvi-060479	Microbotryum violaceum	36.53	5.00e-31	130.00
IUUC-Mmr-061012	Microcebus murinus	65.68	0.00e+00	911.00
IUUC-Mdo-062330	Monodelphis domestica	66.87	0.00e+00	915.00
IUUC-Mmu-063894	Mus musculus	65.34	0.00e+00	879.00
IUUC-Mac-064805	Musa acuminata	44.44	1.00e-56	214.00
IUUC-Mpu-066894	Mustela putorius furo	66.01	0.00e+00	907.00
IUUC-Mlu-067321	Myotis lucifugus	64.64	0.00e+00	729.00
IUUC-Nfi-068451	Neosartorya fischeri	37.30	9.00e-42	166.00
IUUC-Ncr-068667	Neurospora crassa	44.49	1.00e-52	202.00
IUUC-Nle-070058	Nomascus leucogenys	65.96	0.00e+00	876.00
IUUC-Opr-071108	Ochotona princeps	62.44	7.00e-115	408.00
IUUC-Ont-071541	Oreochromis niloticus	72.84	0.00e+00	1006.00
IUUC-Oan-073232	Ornithorhynchus anatinus	92.99	2.00e-142	499.00
IUUC-Ocu-074893	Oryctolagus cuniculus	92.62	6.00e-142	498.00
IUUC-Oba-075623	Oryza barthii	39.38	3.00e-28	119.00
IUUC-Obr-076653	Oryza brachyantha	42.92	6.00e-55	209.00
IUUC-Ogl-077946	Oryza glaberrima	42.57	3.00e-44	171.00
IUUC-Ogu-078775	Oryza glumaepatula	43.61	1.00e-52	199.00
IUUC-Oin-079214	Oryza indica	43.61	9.00e-55	209.00
IUUC-Olo-080799	Oryza longistaminata	32.29	8.00e-29	120.00
IUUC-Ome-081843	Oryza meridionalis	40.42	8.00e-52	198.00
IUUC-Oni-082944	Oryza nivara	39.38	6.00e-30	124.00
IUUC-Opu-083668	Oryza punctata	43.17	1.00e-54	209.00
IUUC-Oru-084249	Oryza rufipogon	35.35	2.00e-35	144.00
IUUC-Osa-086233	Oryza sativa	43.61	5.00e-55	209.00
IUUC-Ola-087121	Oryzias latipes	71.32	0.00e+00	927.00
IUUC-Olu-087772	Ostreococcus lucimarinus	42.11	2.00e-41	162.00
IUUC-Oga-088556	Otolemur garnettii	65.56	0.00e+00	911.00
IUUC-Oar-089768	Ovis aries	65.43	0.00e+00	887.00
IUUC-Ptr-090585	Pan troglodytes	65.84	0.00e+00	908.00
IUUC-Pan-092625	Papio anubis	65.80	0.00e+00	900.00
IUUC-Psi-093462	Pelodiscus sinensis	70.09	0.00e+00	967.00
IUUC-Pma-094468	Petromyzon marinus	78.55	4.00e-127	449.00
IUUC-Pno-094812	Phaeosphaeria nodorum	38.76	4.00e-28	121.00
IUUC-Ppa-095589	Physcomitrella patens	51.79	7.00e-15	75.10
IUUC-Pfo-096762	Poecilia formosa	71.27	0.00e+00	953.00
IUUC-Pab-097890	Pongo abelii	65.80	0.00e+00	899.00
IUUC-Pop-099764	Populus trichocarpa	43.10	1.00e-58	222.00
IUUC-Pca-101121	Procavia capensis	61.12	2.00e-119	422.00
IUUC-Ppe-102076	Prunus persica	43.31	2.00e-56	214.00
IUUC-Pva-102489	Pteropus vampyrus	65.67	0.00e+00	846.00
IUUC-Pgr-103568	Puccinia graminis	40.89	1.00e-47	185.00
IUUC-Ptt-103721	Puccinia triticina	36.36	2.00e-29	124.00
IUUC-Pte-104118	Pyrenophora teres	42.54	2.00e-54	207.00
IUUC-Pyt-104612	Pyrenophora triticirepentis	42.54	1.00e-54	208.00
IUUC-Rno-105627	Rattus norvegicus	65.17	0.00e+00	894.00
IUUC-Sce-106312	Saccharomyces cerevisiae	44.90	7.00e-55	208.00
IUUC-Sha-106619	Sarcophilus harrisii	67.25	0.00e+00	920.00
IUUC-Sja-107765	Schizosaccharomyces japonicus	49.35	1.00e-55	211.00
IUUC-Spo-108328	Schizosaccharomyces pombe	51.52	5.00e-61	228.00
IUUC-Ssl-108577	Sclerotinia sclerotiorum	42.50	5.00e-50	192.00
IUUC-Smo-108760	Selaginella moellendorffii	44.64	1.00e-58	219.00
IUUC-Sit-109923	Setaria italica	39.83	2.00e-51	198.00
IUUC-Sly-110900	Solanum lycopersicum	39.48	1.00e-50	195.00
IUUC-Stu-112226	Solanum tuberosum	39.48	2.00e-50	194.00
IUUC-Sar-113620	Sorex araneus	72.46	3.00e-166	578.00
IUUC-Sbi-114318	Sorghum bicolor	40.52	8.00e-54	206.00
IUUC-Sre-114956	Sporisorium reilianum	46.50	3.00e-64	240.00
IUUC-Ssc-116116	Sus scrofa	93.96	2.00e-140	491.00
IUUC-Tgu-117357	Taeniopygia guttata	71.41	0.00e+00	1036.00
IUUC-Tru-118759	Takifugu rubripes	70.45	0.00e+00	757.00
IUUC-Tsy-119387	Tarsius syrichta	64.35	0.00e+00	830.00
IUUC-Tni-120536	Tetraodon nigroviridis	65.97	9.00e-136	477.00
IUUC-Tca-121035	Theobroma cacao	45.18	2.00e-57	218.00
IUUC-Tre-121996	Trichoderma reesei	41.95	6.00e-47	183.00
IUUC-Tvi-122371	Trichoderma virens	43.22	7.00e-54	206.00
IUUC-Tae-124373	Triticum aestivum	42.48	2.00e-53	204.00
IUUC-Tur-126324	Triticum urartu	42.48	9.00e-54	206.00
IUUC-Tme-127072	Tuber melanosporum	39.56	4.00e-42	167.00
IUUC-Tbe-128107	Tupaia belangeri	62.01	0.00e+00	798.00
IUUC-Ttr-128846	Tursiops truncatus	67.54	0.00e+00	884.00
IUUC-Uma-129607	Ustilago maydis	46.50	2.00e-64	241.00
IUUC-Vda-129971	Verticillium dahliae	42.38	9.00e-47	183.00
IUUC-Vpa-130298	Vicugna pacos	61.94	0.00e+00	652.00
IUUC-Vvi-131651	Vitis vinifera	44.74	7.00e-58	219.00
IUUC-Xtr-132728	Xenopus tropicalis	69.49	0.00e+00	772.00
IUUC-Xma-133789	Xiphophorus maculatus	70.34	0.00e+00	952.00
IUUC-Yli-134461	Yarrowia lipolytica	42.22	2.00e-47	183.00
IUUC-Zma-135031	Zea mays	41.95	8.00e-54	205.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence