iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

mRNA Expression
GEO	FFGED
Protein-protein Interaction
IID	iRefIndex	HINT	Mentha
Post-translational Modifications (PTMs)
CPLM	dbPAF	dbPTM	UniProt
PHOSIDA	BioGRID
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.40e-11	41.9	563	591

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 4    dsvtclaf.sd.tllvsGsdDgtikvWDl 30
           ++vt++af ++ +ll++G+  g++++W l
   Q: 563  GKVTSVAFsPSgGLLAVGNEQGKVRLWKL 591
           68*******666***************96 PP

Organism

Saccharomyces cerevisiae

Functional Description
(View)

Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.

Protein Sequence
(Fasta)

MTMATTAMNV SVPPPDEEEQ LLAKFVFGDT TDLQENLAKF NADFIFNEQE MDVEDQEDEG 60
SESDNSEEDE AQNGELDHVN NDQLFFVDDG GNEDSQDKNE DTMDVDDEDD SSSDDYSEDS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGACAATGG CAACAACCGC AATGAATGTT AGCGTACCTC CACCAGATGA AGAAGAACAG 60
TTACTAGCCA AATTTGTATT CGGTGATACA ACAGATTTAC AAGAAAATCT CGCTAAATTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0677--Repeat
KW-0687--Ribonucleoprotein
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0034388--C:Pwp2p-containing subcomplex of 90S preribosome
GO:0032040--C:small-subunit processome
GO:0000480--P:endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000447--P:endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000472--P:endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0031167--P:rRNA methylation

KEGG

sce:YJL069C

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000184	Aegilops tauschii	30.08	9.00e-49	186.00
IUUC-Aml-002252	Ailuropoda melanoleuca	27.39	8.00e-41	159.00
IUUC-Atr-002575	Amborella trichopoda	31.14	7.00e-53	199.00
IUUC-Aly-006512	Arabidopsis lyrata	31.50	4.00e-51	193.00
IUUC-Ath-007244	Arabidopsis thaliana	31.71	6.00e-51	192.00
IUUC-Ago-007895	Ashbya gossypii	60.46	1.00e-180	624.00
IUUC-Acl-008343	Aspergillus clavatus	38.20	1.00e-74	272.00
IUUC-Afl-008445	Aspergillus flavus	35.11	5.00e-87	313.00
IUUC-Aor-009986	Aspergillus oryzae	35.47	5.00e-86	309.00
IUUC-Ame-011338	Astyanax mexicanus	26.82	8.00e-36	142.00
IUUC-Bgr-012201	Blumeria graminis	32.47	1.00e-69	254.00
IUUC-Bta-013058	Bos taurus	27.39	6.00e-39	153.00
IUUC-Bci-013619	Botrytis cinerea	32.78	5.00e-74	270.00
IUUC-Bdi-014771	Brachypodium distachyon	29.09	2.00e-46	178.00
IUUC-Bol-015230	Brassica oleracea	32.68	5.00e-48	183.00
IUUC-Bra-017041	Brassica rapa	32.24	4.00e-46	177.00
IUUC-Cel-018293	Caenorhabditis elegans	22.87	1.00e-26	112.00
IUUC-Cja-019503	Callithrix jacchus	27.39	1.00e-40	158.00
IUUC-Cfa-020743	Canis familiaris	27.93	2.00e-40	158.00
IUUC-Cpo-021488	Cavia porcellus	28.68	1.00e-41	162.00
IUUC-Cre-022926	Chlamydomonas reinhardtii	28.17	3.00e-50	190.00
IUUC-Csa-023110	Chlorocebus sabaeus	27.39	3.00e-40	157.00
IUUC-Cin-025208	Ciona intestinalis	25.68	1.00e-29	121.00
IUUC-Cme-027351	Cyanidioschyzon merolae	27.81	1.00e-42	165.00
IUUC-Dre-027524	Danio rerio	22.64	2.00e-20	92.00
IUUC-Dno-029243	Dasypus novemcinctus	27.65	1.00e-40	158.00
IUUC-Dor-030110	Dipodomys ordii	28.29	1.00e-40	159.00
IUUC-Dse-031217	Dothistroma septosporum	33.77	5.00e-71	259.00
IUUC-Dme-031999	Drosophila melanogaster	25.21	9.00e-30	122.00
IUUC-Eca-034350	Equus caballus	27.65	6.00e-40	156.00
IUUC-Eeu-034991	Erinaceus europaeus	28.21	4.00e-38	150.00
IUUC-Fal-036614	Ficedula albicollis	26.47	5.00e-32	130.00
IUUC-Gmo-039183	Gadus morhua	26.86	1.00e-38	152.00
IUUC-Gga-040922	Gallus gallus	24.63	3.00e-34	137.00
IUUC-Gac-041475	Gasterosteus aculeatus	28.99	8.00e-33	132.00
IUUC-Gma-043598	Glycine max	31.57	1.00e-56	212.00
IUUC-Ggo-044517	Gorilla gorilla	27.65	6.00e-41	159.00
IUUC-Hsa-045741	Homo sapiens	27.65	7.00e-41	159.00
IUUC-Hvu-047463	Hordeum vulgare	37.72	2.00e-19	86.70
IUUC-Itr-048128	Ictidomys tridecemlineatus	28.50	1.00e-42	165.00
IUUC-Kpa-049335	Komagataella pastoris	40.74	4.00e-105	373.00
IUUC-Lch-049816	Latimeria chalumnae	27.91	1.00e-31	128.00
IUUC-Lpe-051140	Leersia perrieri	28.90	5.00e-44	170.00
IUUC-Loc-051942	Lepisosteus oculatus	29.64	6.00e-33	133.00
IUUC-Laf-054245	Loxodonta africana	27.58	7.00e-41	159.00
IUUC-Meu-056300	Macropus eugenii	24.60	3.00e-28	117.00
IUUC-Mor-057184	Magnaporthe oryzae	30.27	3.00e-57	214.00
IUUC-Mtr-058019	Medicago truncatula	32.33	1.00e-50	191.00
IUUC-Mga-060179	Meleagris gallopavo	26.36	6.00e-34	135.00
IUUC-Mvi-060435	Microbotryum violaceum	29.89	2.00e-37	148.00
IUUC-Mdo-062187	Monodelphis domestica	27.11	6.00e-36	143.00
IUUC-Mmu-063386	Mus musculus	29.46	6.00e-44	169.00
IUUC-Mpu-066084	Mustela putorius furo	28.17	7.00e-41	159.00
IUUC-Mlu-068130	Myotis lucifugus	28.68	5.00e-42	163.00
IUUC-Nle-069743	Nomascus leucogenys	27.76	5.00e-38	150.00
IUUC-Opr-071111	Ochotona princeps	27.46	3.00e-41	160.00
IUUC-Ont-071979	Oreochromis niloticus	27.01	2.00e-38	151.00
IUUC-Ocu-073754	Oryctolagus cuniculus	27.98	3.00e-42	164.00
IUUC-Oba-075007	Oryza barthii	29.96	1.00e-46	179.00
IUUC-Obr-076447	Oryza brachyantha	29.54	4.00e-48	183.00
IUUC-Ogl-077733	Oryza glaberrima	29.96	6.00e-47	179.00
IUUC-Ogu-078828	Oryza glumaepatula	29.96	9.00e-47	179.00
IUUC-Oin-080152	Oryza indica	29.75	1.00e-46	179.00
IUUC-Olo-080983	Oryza longistaminata	29.75	3.00e-46	177.00
IUUC-Oni-082443	Oryza nivara	29.75	2.00e-46	178.00
IUUC-Opu-083771	Oryza punctata	30.17	2.00e-45	175.00
IUUC-Oru-084272	Oryza rufipogon	29.75	2.00e-46	178.00
IUUC-Osa-085885	Oryza sativa	29.75	8.00e-47	179.00
IUUC-Olu-087644	Ostreococcus lucimarinus	23.68	8.00e-17	79.30
IUUC-Oga-088834	Otolemur garnettii	27.91	3.00e-41	161.00
IUUC-Oar-089712	Ovis aries	27.13	1.00e-38	152.00
IUUC-Pan-092561	Papio anubis	27.91	2.00e-41	161.00
IUUC-Ppa-095397	Physcomitrella patens	33.54	1.00e-52	198.00
IUUC-Pfo-097068	Poecilia formosa	28.53	2.00e-41	161.00
IUUC-Pop-099471	Populus trichocarpa	33.61	3.00e-46	177.00
IUUC-Ppe-101446	Prunus persica	30.45	4.00e-53	200.00
IUUC-Pva-102851	Pteropus vampyrus	27.20	9.00e-38	149.00
IUUC-Pgr-103370	Puccinia graminis	29.09	6.00e-50	189.00
IUUC-Ptt-103838	Puccinia triticina	27.56	1.00e-39	155.00
IUUC-Rno-104910	Rattus norvegicus	29.46	2.00e-43	167.00
IUUC-Sja-107746	Schizosaccharomyces japonicus	38.42	2.00e-101	360.00
IUUC-Spo-108268	Schizosaccharomyces pombe	42.68	8.00e-95	338.00
IUUC-Smo-108815	Selaginella moellendorffii	32.70	6.00e-49	186.00
IUUC-Sit-109706	Setaria italica	29.03	7.00e-47	179.00
IUUC-Sly-111533	Solanum lycopersicum	31.38	6.00e-54	202.00
IUUC-Stu-112853	Solanum tuberosum	31.80	3.00e-54	204.00
IUUC-Sbi-114747	Sorghum bicolor	29.45	4.00e-50	190.00
IUUC-Ssc-115916	Sus scrofa	27.91	2.00e-41	161.00
IUUC-Tgu-117291	Taeniopygia guttata	27.27	3.00e-34	137.00
IUUC-Tru-118724	Takifugu rubripes	26.86	1.00e-38	152.00
IUUC-Tsy-118928	Tarsius syrichta	30.80	3.00e-28	117.00
IUUC-Tca-121229	Theobroma cacao	33.26	1.00e-56	212.00
IUUC-Tae-125218	Triticum aestivum	30.08	1.00e-48	185.00
IUUC-Tur-126082	Triticum urartu	37.69	1.00e-20	92.00
IUUC-Ttr-128904	Tursiops truncatus	27.47	2.00e-31	128.00
IUUC-Vpa-130817	Vicugna pacos	27.72	1.00e-42	165.00
IUUC-Vvi-131395	Vitis vinifera	31.72	3.00e-55	207.00
IUUC-Xtr-132971	Xenopus tropicalis	25.11	3.00e-35	141.00
IUUC-Xma-133391	Xiphophorus maculatus	28.00	5.00e-41	160.00
IUUC-Yli-134613	Yarrowia lipolytica	36.57	5.00e-86	309.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence