iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-006954

UUCD1 version

UUC-ArT-00333

Ensembl Protein ID

AT2G47990.1

UniProt Accession

O82266; Q8GXN5; SWA1_ARATH

Genbank Protein ID

AAC63653.1; AAM15129.1; AEC10921.1; BAC42762.1

Protein Name

Protein SLOW WALKER 1; Protein EMBRYO SAC DEVELOPMENT ARREST 13; Protein EMBRYO SAC DEVELOPMENT ARREST 19

Genbank Nucleotide ID

AC005309; AC006072; CP002685; AK118137

Gene Name

SWA1; EDA13; EDA19; At2g47990; F17A22; T9J23.30

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT2G47990	AT2G47990.1	AT2G47990.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.20e-21	75.9	176	208

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtc..laf.sdtllvsGsdDgtikvWDl 30
           gH+d v+c  ++  +d +lv+Gs+D+t+kvWD 
   Q: 176  GHKDYVRCgdCSPvNDSMLVTGSYDHTVKVWDA 208
           8*******77776999****************5 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Essential protein required for nuclear division and organization during embryo sac development in female gametophyte, probably by promoting rRNA biogenesis essential for the progression of the mitotic division cycles during gametogenesis (PubMed:15634699, PubMed:15980260). Involved in nucleolar processing of pre-18S ribosomal RNA (PubMed:15980260).

Protein Sequence
(Fasta)

MEEELRVRLN DHQVSKVFPV KPKSTAKPVS ESETPESRYW SSFKNHSTPN LVSSVAALAF 60
SPVHPHSLAV AHSATVSLFS SQSLSSSRRF SFRDVVSSVC FRSDGALFAA CDLSGVVQVF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCTAAACCAG CCTCCTTCTC TCTCTCTGTT AGCTGCGTTC TTCTTCAAGC TAGCTCTCTG 60
CTTGTACTCT AGAATAATGG AGGAAGAGCT TCGTGTTCGG CTGAATGACC ATCAAGTGTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0131--Cell cycle
KW-0132--Cell division
KW-0181--Complete proteome
KW-0217--Developmental protein
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR018983--U3_snoRNA-assocProt_15_C
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF09384--UTP15_C
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0005730--C:nucleolus
GO:0007049--P:cell cycle
GO:0051301--P:cell division
GO:0009553--P:embryo sac development
GO:0009561--P:megagametogenesis
GO:0006364--P:rRNA processing

KEGG

ath:AT2G47990

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002117	Ailuropoda melanoleuca	32.94	2.00e-62	233.00
IUUC-Atr-003068	Amborella trichopoda	48.07	2.00e-109	389.00
IUUC-Apl-003926	Anas platyrhynchos	33.26	3.00e-66	245.00
IUUC-Aca-004271	Anolis carolinensis	33.20	9.00e-67	246.00
IUUC-Aly-005525	Arabidopsis lyrata	94.34	0.00e+00	937.00
IUUC-Ago-007973	Ashbya gossypii	30.43	3.00e-46	179.00
IUUC-Acl-008287	Aspergillus clavatus	25.36	2.00e-30	126.00
IUUC-Afl-008504	Aspergillus flavus	26.38	3.00e-39	155.00
IUUC-Afu-008983	Aspergillus fumigatus	32.46	4.00e-30	125.00
IUUC-Ani-009315	Aspergillus nidulans	26.67	2.00e-32	133.00
IUUC-Ang-009690	Aspergillus niger	26.57	2.00e-38	152.00
IUUC-Aor-010181	Aspergillus oryzae	26.38	3.00e-39	155.00
IUUC-Ate-010498	Aspergillus terreus	25.85	3.00e-39	156.00
IUUC-Ame-011814	Astyanax mexicanus	34.27	9.00e-64	237.00
IUUC-Bgr-012273	Blumeria graminis	25.00	2.00e-41	162.00
IUUC-Bta-013068	Bos taurus	33.33	3.00e-64	238.00
IUUC-Bci-013930	Botrytis cinerea	26.94	9.00e-45	174.00
IUUC-Bdi-014876	Brachypodium distachyon	43.05	5.00e-120	424.00
IUUC-Bol-015366	Brassica oleracea	83.15	0.00e+00	806.00
IUUC-Bra-017589	Brassica rapa	81.99	0.00e+00	789.00
IUUC-Cel-018159	Caenorhabditis elegans	26.40	1.00e-36	147.00
IUUC-Cja-019139	Callithrix jacchus	33.40	2.00e-64	238.00
IUUC-Cfa-020742	Canis familiaris	32.21	8.00e-61	227.00
IUUC-Cpo-021707	Cavia porcellus	33.40	6.00e-65	241.00
IUUC-Cre-022665	Chlamydomonas reinhardtii	35.09	4.00e-68	251.00
IUUC-Csa-023024	Chlorocebus sabaeus	33.33	5.00e-65	241.00
IUUC-Cho-024487	Choloepus hoffmanni	37.24	4.00e-41	161.00
IUUC-Cin-025294	Ciona intestinalis	30.62	7.00e-65	240.00
IUUC-Cgl-026388	Colletotrichum gloeosporioides	29.35	6.00e-28	118.00
IUUC-Cne-026945	Cryptococcus neoformans	28.29	2.00e-44	173.00
IUUC-Cme-027108	Cyanidioschyzon merolae	27.13	5.00e-41	161.00
IUUC-Dre-028316	Danio rerio	31.90	2.00e-60	226.00
IUUC-Dno-028985	Dasypus novemcinctus	32.02	8.00e-61	227.00
IUUC-Dor-030219	Dipodomys ordii	29.12	1.00e-31	130.00
IUUC-Dse-031495	Dothistroma septosporum	29.06	4.00e-22	99.00
IUUC-Dme-031769	Drosophila melanogaster	27.98	6.00e-47	181.00
IUUC-Ete-032630	Echinops telfairi	38.59	3.00e-46	178.00
IUUC-Eca-033816	Equus caballus	33.79	2.00e-65	242.00
IUUC-Eeu-034840	Erinaceus europaeus	40.28	5.00e-42	164.00
IUUC-Fca-035751	Felis catus	32.81	1.00e-63	236.00
IUUC-Fal-036733	Ficedula albicollis	32.80	5.00e-68	251.00
IUUC-Fox-037743	Fusarium oxysporum	27.68	2.00e-41	163.00
IUUC-Fso-038395	Fusarium solani	26.94	8.00e-39	154.00
IUUC-Gmo-038803	Gadus morhua	32.64	1.00e-61	230.00
IUUC-Ggr-040092	Gaeumannomyces graminis	37.17	7.00e-31	127.00
IUUC-Gga-040714	Gallus gallus	32.04	4.00e-69	254.00
IUUC-Gac-042640	Gasterosteus aculeatus	31.43	3.00e-65	241.00
IUUC-Gma-044192	Glycine max	55.11	4.00e-160	557.00
IUUC-Ggo-045616	Gorilla gorilla	32.53	9.00e-64	236.00
IUUC-Hsa-046720	Homo sapiens	33.47	8.00e-62	230.00
IUUC-Itr-048796	Ictidomys tridecemlineatus	32.61	2.00e-60	225.00
IUUC-Kpa-049291	Komagataella pastoris	30.75	1.00e-49	190.00
IUUC-Lch-049729	Latimeria chalumnae	33.47	8.00e-66	243.00
IUUC-Lpe-051141	Leersia perrieri	43.84	7.00e-119	420.00
IUUC-Loc-051756	Lepisosteus oculatus	33.07	8.00e-70	257.00
IUUC-Lma-053083	Leptosphaeria maculans	29.59	2.00e-33	136.00
IUUC-Laf-054067	Loxodonta africana	34.79	2.00e-64	239.00
IUUC-Mcc-055096	Macaca mulatta	33.33	5.00e-65	241.00
IUUC-Meu-056604	Macropus eugenii	35.57	5.00e-53	201.00
IUUC-Mor-057186	Magnaporthe oryzae	27.31	9.00e-38	150.00
IUUC-Mtr-058346	Medicago truncatula	58.57	1.00e-162	565.00
IUUC-Mla-059116	Melampsora laricipopulina	29.10	1.00e-55	210.00
IUUC-Mga-060038	Meleagris gallopavo	33.94	6.00e-57	213.00
IUUC-Mvi-060272	Microbotryum violaceum	28.12	3.00e-49	189.00
IUUC-Mmr-060877	Microcebus murinus	33.53	1.00e-64	240.00
IUUC-Mdo-062168	Monodelphis domestica	34.32	2.00e-62	232.00
IUUC-Mmu-063441	Mus musculus	33.73	1.00e-65	243.00
IUUC-Mac-065330	Musa acuminata	51.52	3.00e-109	387.00
IUUC-Mpu-065704	Mustela putorius furo	33.20	4.00e-64	238.00
IUUC-Mlu-067640	Myotis lucifugus	33.20	6.00e-64	237.00
IUUC-Nfi-068589	Neosartorya fischeri	32.46	2.00e-30	126.00
IUUC-Ncr-068769	Neurospora crassa	32.42	1.00e-34	140.00
IUUC-Nle-069105	Nomascus leucogenys	34.21	2.00e-62	232.00
IUUC-Opr-070203	Ochotona princeps	33.00	2.00e-65	242.00
IUUC-Ont-072054	Oreochromis niloticus	32.14	6.00e-68	251.00
IUUC-Oan-073624	Ornithorhynchus anatinus	33.26	6.00e-61	227.00
IUUC-Ocu-074326	Oryctolagus cuniculus	33.00	4.00e-62	231.00
IUUC-Obr-076038	Oryza brachyantha	48.77	1.00e-118	419.00
IUUC-Ogl-077463	Oryza glaberrima	44.66	4.00e-113	401.00
IUUC-Ogu-078631	Oryza glumaepatula	44.88	3.00e-119	421.00
IUUC-Oin-079242	Oryza indica	45.06	4.00e-114	404.00
IUUC-Olo-080652	Oryza longistaminata	43.28	2.00e-105	375.00
IUUC-Ome-081109	Oryza meridionalis	46.09	2.00e-106	380.00
IUUC-Oni-082187	Oryza nivara	45.06	4.00e-114	404.00
IUUC-Opu-083995	Oryza punctata	46.52	2.00e-108	385.00
IUUC-Oru-084962	Oryza rufipogon	46.17	2.00e-108	385.00
IUUC-Osa-086201	Oryza sativa	46.17	2.00e-108	385.00
IUUC-Ola-087115	Oryzias latipes	33.12	2.00e-65	242.00
IUUC-Olu-087842	Ostreococcus lucimarinus	32.34	8.00e-58	217.00
IUUC-Oga-088204	Otolemur garnettii	33.53	1.00e-64	240.00
IUUC-Oar-089297	Ovis aries	32.94	2.00e-61	229.00
IUUC-Ptr-090953	Pan troglodytes	33.33	7.00e-64	237.00
IUUC-Pan-092451	Papio anubis	32.53	6.00e-65	241.00
IUUC-Psi-092999	Pelodiscus sinensis	33.59	1.00e-70	260.00
IUUC-Pma-094304	Petromyzon marinus	35.40	3.00e-47	182.00
IUUC-Pno-095060	Phaeosphaeria nodorum	35.05	1.00e-34	140.00
IUUC-Ppa-095433	Physcomitrella patens	39.62	5.00e-105	374.00
IUUC-Pfo-096433	Poecilia formosa	32.16	6.00e-61	227.00
IUUC-Pab-098677	Pongo abelii	33.13	6.00e-64	237.00
IUUC-Pop-099990	Populus trichocarpa	64.59	2.00e-177	614.00
IUUC-Pca-100444	Procavia capensis	39.83	1.00e-46	180.00
IUUC-Ppe-101318	Prunus persica	63.03	0.00e+00	651.00
IUUC-Pva-102162	Pteropus vampyrus	29.09	3.00e-48	185.00
IUUC-Pgr-103329	Puccinia graminis	27.10	2.00e-53	202.00
IUUC-Ptt-103837	Puccinia triticina	28.01	4.00e-53	202.00
IUUC-Pte-104133	Pyrenophora teres	32.46	2.00e-37	149.00
IUUC-Pyt-104675	Pyrenophora triticirepentis	32.46	4.00e-37	149.00
IUUC-Rno-105004	Rattus norvegicus	33.53	2.00e-64	239.00
IUUC-Sce-106443	Saccharomyces cerevisiae	27.78	7.00e-46	177.00
IUUC-Sha-107199	Sarcophilus harrisii	34.06	2.00e-65	242.00
IUUC-Sja-107670	Schizosaccharomyces japonicus	31.19	9.00e-62	230.00
IUUC-Spo-108125	Schizosaccharomyces pombe	29.88	2.00e-61	229.00
IUUC-Ssl-108534	Sclerotinia sclerotiorum	26.94	9.00e-45	174.00
IUUC-Smo-109588	Selaginella moellendorffii	37.98	2.00e-100	358.00
IUUC-Sit-110043	Setaria italica	47.56	4.00e-104	371.00
IUUC-Stu-112396	Solanum tuberosum	60.19	0.00e+00	631.00
IUUC-Sar-113359	Sorex araneus	31.55	1.00e-35	143.00
IUUC-Sre-114995	Sporisorium reilianum	33.48	6.00e-57	214.00
IUUC-Ssc-115397	Sus scrofa	33.60	1.00e-64	239.00
IUUC-Tgu-116834	Taeniopygia guttata	31.38	4.00e-70	258.00
IUUC-Tru-118764	Takifugu rubripes	31.94	4.00e-69	254.00
IUUC-Tsy-119118	Tarsius syrichta	32.61	3.00e-63	235.00
IUUC-Tni-120053	Tetraodon nigroviridis	31.54	2.00e-68	253.00
IUUC-Tca-121842	Theobroma cacao	62.48	0.00e+00	637.00
IUUC-Tre-122172	Trichoderma reesei	34.29	6.00e-39	154.00
IUUC-Tvi-122288	Trichoderma virens	33.00	2.00e-30	126.00
IUUC-Tae-125722	Triticum aestivum	42.27	6.00e-107	380.00
IUUC-Tur-126846	Triticum urartu	40.73	3.00e-64	237.00
IUUC-Tme-127164	Tuber melanosporum	28.83	1.00e-52	200.00
IUUC-Tbe-127458	Tupaia belangeri	34.30	1.00e-62	233.00
IUUC-Ttr-128680	Tursiops truncatus	33.33	3.00e-60	225.00
IUUC-Uma-129508	Ustilago maydis	32.39	4.00e-55	208.00
IUUC-Vda-129696	Verticillium dahliae	31.89	7.00e-38	151.00
IUUC-Vpa-130820	Vicugna pacos	33.66	2.00e-64	239.00
IUUC-Vvi-131126	Vitis vinifera	60.61	6.00e-178	616.00
IUUC-Xtr-131826	Xenopus tropicalis	33.27	5.00e-71	261.00
IUUC-Xma-133373	Xiphophorus maculatus	32.28	2.00e-63	235.00
IUUC-Yli-134432	Yarrowia lipolytica	28.71	8.00e-40	157.00
IUUC-Zma-135241	Zea mays	48.31	4.00e-110	390.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence