iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d001828	Zm00001d001828_T010	Zm00001d001828_T010
Zm00001d001828	Zm00001d001828_T006	Zm00001d001828_T006
Zm00001d001828	Zm00001d001828_T023	Zm00001d001828_T023
Zm00001d001828	Zm00001d001828_T002	Zm00001d001828_T002
Zm00001d001828	Zm00001d001828_T019	Zm00001d001828_T019
Zm00001d001828	Zm00001d001828_T033	Zm00001d001828_T033
Zm00001d001828	Zm00001d001828_T012	Zm00001d001828_T012
Zm00001d001828	Zm00001d001828_T011	Zm00001d001828_T011
Zm00001d001828	Zm00001d001828_T028	Zm00001d001828_T028
Zm00001d001828	Zm00001d001828_T015	Zm00001d001828_T015
Zm00001d001828	Zm00001d001828_T016	Zm00001d001828_T016
Zm00001d001828	Zm00001d001828_T031	Zm00001d001828_T031

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.20e-37	125.8	145	183
UBD/Beta-Prp	1.60e-57	197.0	18	268

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gHt +v+ ++f +d + +vsG+ D+ +k+WDl+ g+ll+
   Q: 145  GHTRGVNTIRFtPDgRWVVSGGEDNIVKLWDLTAGKLLH 183
           8***********99999******************9987 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkgheds 96
           +h+s ++c+k+  + +++l+tg++d+++ +w + +++ + slsgh+++v +v f++++ + + g+  +tik+wdl+  k+v+tl+gh ++
   Q: 18   AHSSNVNCLKIgRKTSRVLVTGGEDHKVNLWAIGKPNSILSLSGHTSAVESVGFDSTEVFVAAGAASGTIKLWDLEEAKIVRTLTGHRSN 107
           7999999****999********************************************9999**************************** PP
   S: 97   vlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvysl 186
            +s++f+p g++++sGs d  +++wd++ + c++ t +gh++ vn++++ pdg+ +vsG+ D++v+lWdl  gkll++++  h+++++++
   Q: 108  CMSVDFHPFGEFFASGSLDTNLKIWDIRRKNCIH-TYKGHTRGVNTIRFTPDGRWVVSGGEDNIVKLWDLTAGKLLHEFKC-HEGQIQCI 195
           **********************************.********************************************98.******** PP
   S: 187  sfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktl 260
           +f++  + l++gs d+tvk+wdl+t e + +    t+ v+s+ f p++  l++g  ++s++++  +   +  t+
   Q: 196  DFHPHEFLLATGSADKTVKFWDLETFELIGSTGPETTGVRSMTFNPDGRSLLCG-LHESLKVFSWEPIRCHDTV 268
           *********************************************999999999.5778887655555555554 PP

Organism

Zea mays

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MTTNTKRAYK LRVEEFVAHS SNVNCLKIGR KTSRVLVTGG EDHKVNLWAI GKPNSILSLS 60
GHTSAVESVG FDSTEVFVAA GAASGTIKLW DLEEAKIVRT LTGHRSNCMS VDFHPFGEFF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GAAGAGGGAG GGAGGCTCTG GCGGGAGTGT GTTACGGGCT TACGGCCGCC TCGTGCTGGT 60
GACAGGCGCG GCGCGAGATC CGGGCTGGAA GGGCTGGCGG GTCCCGTTGG TGGCGCCGTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000954	Aegilops tauschii	67.24	0.00e+00	1243.00
IUUC-Apl-003305	Anas platyrhynchos	51.67	3.00e-101	362.00
IUUC-Bdi-014652	Brachypodium distachyon	78.73	0.00e+00	1454.00
IUUC-Bra-017068	Brassica rapa	62.60	7.00e-177	613.00
IUUC-Dme-032188	Drosophila melanogaster	38.87	1.00e-58	221.00
IUUC-Hvu-047649	Hordeum vulgare	77.42	0.00e+00	1459.00
IUUC-Oba-075448	Oryza barthii	69.22	0.00e+00	1224.00
IUUC-Obr-076385	Oryza brachyantha	77.73	0.00e+00	1431.00
IUUC-Ogl-077427	Oryza glaberrima	77.33	0.00e+00	1435.00
IUUC-Ogu-078428	Oryza glumaepatula	54.25	0.00e+00	827.00
IUUC-Oin-079811	Oryza indica	76.52	0.00e+00	1433.00
IUUC-Olo-080245	Oryza longistaminata	74.08	0.00e+00	1362.00
IUUC-Oni-082640	Oryza nivara	69.22	0.00e+00	1224.00
IUUC-Opu-083748	Oryza punctata	72.96	0.00e+00	1330.00
IUUC-Oru-084609	Oryza rufipogon	69.22	0.00e+00	1224.00
IUUC-Ppa-095379	Physcomitrella patens	69.31	1.00e-157	550.00
IUUC-Smo-109409	Selaginella moellendorffii	68.02	7.00e-161	560.00
IUUC-Sit-110360	Setaria italica	87.24	0.00e+00	1573.00
IUUC-Stu-112462	Solanum tuberosum	70.42	0.00e+00	644.00
IUUC-Ssc-115949	Sus scrofa	49.38	6.00e-50	191.00
IUUC-Tae-125307	Triticum aestivum	78.60	0.00e+00	1473.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence