iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d004739	Zm00001d004739_T005	Zm00001d004739_T005
Zm00001d004739	Zm00001d004739_T004	Zm00001d004739_T004
Zm00001d004739	Zm00001d004739_T001	Zm00001d004739_T001
Zm00001d004739	Zm00001d004739_T002	Zm00001d004739_T002
Zm00001d004739	Zm00001d004739_T003	Zm00001d004739_T003

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.60e-10	41.4	257	290

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sdtllvsGsdDgtikvWDlrtgv 34
           H+++vtcl   +d l+v Gs  g++ + D ++g 
   Q: 257  HSSPVTCLMItDDQLIVGGSTFGNVAIADQTSGQ 290
           9*******99655*************99988876 PP

Organism

Zea mays

Protein Sequence
(Fasta)

MEASGSRVRR GSPVPKRRRG VGVATGFGST AQSLNDDILR SVFSRLDDHF DLARCSAVCG 60
SCSVFFADGK MTNFDGRNRI IETAHLMRDM YYKRNPPARG SSSNISVKSY FEMLAMDEHA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AACCGGCCCG AGAGCGCAAT GCACCAGCAA TGGAGGCGAG CGGCAGTCGG GTCCGGAGGG 60
GGAGCCCGGT CCCCAAGCGC CGCAGAGGCG TCGGCGTGGC TACTGGCTTC GGGTCTACGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

SMART

SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003151	Amborella trichopoda	43.84	4.00e-83	301.00
IUUC-Aly-005690	Arabidopsis lyrata	40.60	1.00e-94	339.00
IUUC-Ath-006699	Arabidopsis thaliana	38.64	2.00e-94	338.00
IUUC-Bdi-014108	Brachypodium distachyon	71.34	0.00e+00	661.00
IUUC-Bol-015377	Brassica oleracea	40.85	1.00e-99	355.00
IUUC-Bra-016934	Brassica rapa	47.06	1.00e-90	326.00
IUUC-Gma-043394	Glycine max	43.93	2.00e-93	335.00
IUUC-Lpe-051613	Leersia perrieri	76.24	0.00e+00	644.00
IUUC-Mtr-057690	Medicago truncatula	44.25	1.00e-95	342.00
IUUC-Mac-064938	Musa acuminata	60.84	7.00e-113	399.00
IUUC-Oba-075418	Oryza barthii	81.79	0.00e+00	630.00
IUUC-Obr-076882	Oryza brachyantha	78.79	0.00e+00	703.00
IUUC-Ogl-077438	Oryza glaberrima	79.53	0.00e+00	697.00
IUUC-Ogu-078943	Oryza glumaepatula	79.06	0.00e+00	693.00
IUUC-Oin-079069	Oryza indica	78.82	0.00e+00	692.00
IUUC-Olo-080409	Oryza longistaminata	70.32	2.00e-175	608.00
IUUC-Oni-083056	Oryza nivara	78.12	0.00e+00	686.00
IUUC-Opu-084172	Oryza punctata	80.14	0.00e+00	697.00
IUUC-Oru-085030	Oryza rufipogon	78.59	0.00e+00	690.00
IUUC-Osa-085520	Oryza sativa	78.59	0.00e+00	690.00
IUUC-Ppa-095450	Physcomitrella patens	32.69	2.00e-34	139.00
IUUC-Pop-099796	Populus trichocarpa	48.33	3.00e-97	348.00
IUUC-Ppe-101252	Prunus persica	44.84	9.00e-97	346.00
IUUC-Smo-108718	Selaginella moellendorffii	28.09	7.00e-24	104.00
IUUC-Sit-109830	Setaria italica	83.22	0.00e+00	725.00
IUUC-Sly-111786	Solanum lycopersicum	45.65	3.00e-94	338.00
IUUC-Sbi-114102	Sorghum bicolor	88.33	0.00e+00	785.00
IUUC-Tca-121562	Theobroma cacao	46.15	2.00e-98	351.00
IUUC-Tae-122920	Triticum aestivum	73.49	0.00e+00	654.00
IUUC-Tur-126707	Triticum urartu	62.01	3.00e-152	530.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence