iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d008742	Zm00001d008742_T009	Zm00001d008742_T009
Zm00001d008742	Zm00001d008742_T007	Zm00001d008742_T007
Zm00001d008742	Zm00001d008742_T002	Zm00001d008742_T002
Zm00001d008742	Zm00001d008742_T003	Zm00001d008742_T003
Zm00001d008742	Zm00001d008742_T004	Zm00001d008742_T004
Zm00001d008742	Zm00001d008742_T011	Zm00001d008742_T011
Zm00001d008742	Zm00001d008742_T010	Zm00001d008742_T010
Zm00001d008742	Zm00001d008742_T005	Zm00001d008742_T005
Zm00001d008742	Zm00001d008742_T006	Zm00001d008742_T006

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.70e-26	92.0	573	606
UBD/Beta-Prp	1.90e-46	160.6	568	704

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtg 33
            t+sv c++f sd +l+++G++D+++ +W+ +t 
   Q: 573  STSSVLCCHFsSDgKLIATGGHDKKVFLWNADTL 606
           5899*******999****************7665 PP

UBD/Beta-Prp

   S: 88   htlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdl.ktgkllrtlt 176
           ++ ++ ++svl+++fs +g+ +++G+hd+ + +w+ +t +  + +l++h+ +++ v+++p++  l+++s D+tvr+Wd  + g  +rt+t
   Q: 568  SSAQASTSSVLCCHFSSDGKLIATGGHDKKVFLWNADTLKQKS-MLEEHSLLITDVRFSPSTPRLATSSFDKTVRVWDAdNHGYSIRTFT 656
           4556677777777777777777777777777777777777777.7777777777777777777777777777777777766677777777 PP
   S: 177  gghtdsvyslsfdsng.kelvsgsldgtvklwdlqtgecvrtlnghtdn 224
           g h  sv sl+f++n+   + s++ d+ +++w++++g+ vr+++g +++
   Q: 657  G-HSASVMSLDFHPNKdDLICSCDGDNEIRFWSIKHGNAVRIFKGGSTQ 704
           7.77777777777777444567777777777777777777777776655 PP

Organism

Zea mays

Protein Sequence
(Fasta)

MAHNVWEADK MLDSYIYDYL LKRNLQNTAK AFQAESNVPS APVSIDAPGG FLFEWWSVFW 60
DVFIARTNEK HSDSATSYLE SIKAREQQQQ SQHQIQTQQL LLQRHAQQHP QEQQQWRQQK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCCTTTCTTT TCCGTTCTTC TCCGTACCCC AATCACTGCT ACTCAACAGC CAACTCTTTC 60
GCAACCAAAT ATTTCTTCTG GCGTTTTGGG GTTTGCAAAC CGCTATCAAC ATTGGAGTTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR006692--Coatomer_WD-assoc_reg
IPR006594--LisH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF08513--LisH
PF00400--WD40

SMART

SM00667--LisH
SM00320--WD40

Gene Ontology

GO:0030117--C:membrane coat
GO:0005198--F:structural molecule activity
GO:0006886--P:intracellular protein transport
GO:0016192--P:vesicle-mediated transport

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002977	Amborella trichopoda	48.97	0.00e+00	687.00
IUUC-Bdi-014657	Brachypodium distachyon	66.67	0.00e+00	860.00
IUUC-Gma-043858	Glycine max	52.30	0.00e+00	626.00
IUUC-Hvu-047499	Hordeum vulgare	68.46	6.00e-156	543.00
IUUC-Lpe-051564	Leersia perrieri	61.17	0.00e+00	726.00
IUUC-Oba-075419	Oryza barthii	66.85	0.00e+00	812.00
IUUC-Obr-076118	Oryza brachyantha	69.16	0.00e+00	857.00
IUUC-Ogl-077064	Oryza glaberrima	69.70	0.00e+00	880.00
IUUC-Ogu-078816	Oryza glumaepatula	66.17	0.00e+00	800.00
IUUC-Oin-079222	Oryza indica	66.30	0.00e+00	802.00
IUUC-Ome-081375	Oryza meridionalis	64.16	0.00e+00	893.00
IUUC-Oni-082753	Oryza nivara	66.71	0.00e+00	814.00
IUUC-Opu-083283	Oryza punctata	64.60	0.00e+00	924.00
IUUC-Oru-084538	Oryza rufipogon	66.85	0.00e+00	810.00
IUUC-Osa-086142	Oryza sativa	69.70	0.00e+00	878.00
IUUC-Sit-110603	Setaria italica	81.88	0.00e+00	1188.00
IUUC-Tca-121720	Theobroma cacao	52.60	9.00e-173	600.00
IUUC-Tae-125545	Triticum aestivum	66.26	0.00e+00	772.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence