iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-006921

UUCD1 version

UUC-ArT-00570

Ensembl Protein ID

AT5G02750.1

UniProt Accession

Q8GXF8; Q9LZ10; SHGR9_ARATH

Genbank Protein ID

CAB86029.1; AED90513.1; BAC42880.1; AAO63972.1

Protein Name

E3 ubiquitin-protein ligase SGR9, amyloplastic; Protein SHOOT GRAVITROPISM 9; RING-type E3 ubiquitin transferase SGR9

Genbank Nucleotide ID

AL162973; CP002688; AK118262; BT005552

Gene Name

SGR9; At5g02750; F9G14.60

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G02750	AT5G02750.1	AT5G02750.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	3.10e-08	34.9	214	255

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf...kdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C iC+e++   +d ++ +pC+H+fh +C+  w       sk+ +CP Cr
   Q: 214  CVICKEEMsegRD-VCEMPCQHFFHWKCILPW------LSKKNTCPFCR 255
           ********66444.******************......**********8 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Modulates amyloplast dynamics and sedimentation in statocytes during inflorescence, hypocotyl and root gravitropism, probably by regulating amyloplast interaction with actin filaments (AFs) in endodermal cells.

Protein Sequence
(Fasta)

MEDENTTIIM ASLSALSPSH LTNLTHSILS ISHHHRRRLG AVLSSPTLFS LTLRHLLSLS 60
LPDKTHLIAN HLLSLLHPLL IHRKHHSSYA VTMKLRDLDA VVLLLFLCET HQLHPDVLEA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTCCAATCCC AAATTTACAT CTATCAATTA CATCAAAACC CAAACAAGCA AAGCCGACAA 60
TAATCTCTTT TGTACCACAA CCATTTGTTT TTTCCCTAAT AGAAAAATCA CCAATATTTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0035--Amyloplast
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0934--Plastid
KW-1185--Reference proteome
KW-0808--Transferase
KW-0809--Transit peptide
KW-0832--Ubl conjugation
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0009501--C:amyloplast
GO:0061630--F:ubiquitin protein ligase activity
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0009630--P:gravitropism
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0000209--P:protein polyubiquitination
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process

KEGG

ath:AT5G02750

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002887	Amborella trichopoda	29.33	2.00e-19	89.00
IUUC-Aly-005538	Arabidopsis lyrata	95.05	8.00e-119	419.00
IUUC-Bdi-014905	Brachypodium distachyon	30.19	4.00e-18	84.00
IUUC-Bol-016141	Brassica oleracea	81.75	6.00e-88	316.00
IUUC-Bra-017782	Brassica rapa	85.05	6.00e-87	313.00
IUUC-Gma-043966	Glycine max	49.82	3.00e-49	187.00
IUUC-Lpe-051463	Leersia perrieri	35.03	3.00e-22	97.80
IUUC-Mac-065543	Musa acuminata	35.33	2.00e-27	115.00
IUUC-Oba-075686	Oryza barthii	31.41	9.00e-18	82.80
IUUC-Ogu-078394	Oryza glumaepatula	31.41	9.00e-18	82.80
IUUC-Oin-079750	Oryza indica	31.41	3.00e-18	84.70
IUUC-Oni-082513	Oryza nivara	31.41	2.00e-18	85.10
IUUC-Oru-084366	Oryza rufipogon	31.41	1.00e-17	82.40
IUUC-Osa-085930	Oryza sativa	31.41	2.00e-18	85.50
IUUC-Pop-099681	Populus trichocarpa	52.46	1.00e-45	176.00
IUUC-Sly-111812	Solanum lycopersicum	47.00	3.00e-48	184.00
IUUC-Stu-112332	Solanum tuberosum	45.58	1.00e-45	176.00
IUUC-Sbi-114490	Sorghum bicolor	52.46	1.00e-15	76.30
IUUC-Tca-121044	Theobroma cacao	54.45	8.00e-49	186.00
IUUC-Vvi-131513	Vitis vinifera	45.61	6.00e-47	180.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence