iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d010710	Zm00001d010710_T005	Zm00001d010710_T005
Zm00001d010710	Zm00001d010710_T006	Zm00001d010710_T006
Zm00001d010710	Zm00001d010710_T002	Zm00001d010710_T002
Zm00001d010710	Zm00001d010710_T008	Zm00001d010710_T008
Zm00001d010710	Zm00001d010710_T015	Zm00001d010710_T015
Zm00001d010710	Zm00001d010710_T014	Zm00001d010710_T014
Zm00001d010710	Zm00001d010710_T003	Zm00001d010710_T003
Zm00001d010710	Zm00001d010710_T011	Zm00001d010710_T011
Zm00001d010710	Zm00001d010710_T012	Zm00001d010710_T012
Zm00001d010710	Zm00001d010710_T004	Zm00001d010710_T004
Zm00001d010710	Zm00001d010710_T013	Zm00001d010710_T013

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	2.30e-72	246.1	23	365

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

DUB/USP

   S: 2    GlkNlgNtCYmNSvLQcLsnipelrellle.kkkeklneenpkepkgellkslqklfeelw.kskkkavsprellkalkkeaeefsgyeq 89
           GlkNlgNtCY+NSvLQcL+++p+l+ ++l  ++++++++  p+ ++ + l+ l++ ++ l+  +     sp ++++++  +ae+f+  +q
   Q: 23   GLKNLGNTCYLNSVLQCLASTPPLATFCLAsRHSNQCKKVFPNRDNDCALCVLERQIARLLrADAGALDSPAKVIRCMPLFAEHFRWGRQ 112
           9**************************999899*******999999999999999999998566777789******************** PP
   S: 90   qDaqEflaflldqleeelkkeknkpkeeeeeedkselsdeaeekkkkknk.slisdlFqgqlksqikclecdnvssreepfldlslpvpg 178
           +Da+Efl++++d+ +++  +         ++ +  ++s +  e+   ++   ++ ++F+g l sq+kclec+ +s+++++ +d+sl++pg
   Q: 113  EDAHEFLRYVVDACHTADLR-------MRKGLRAAAASGNCGEDVRGQGVcLVMRETFGGALLSQVKCLECKGESNKTDEIMDISLDLPG 195
           ***************97622.......22233333444445555555555156678********************************** PP
   S: 179  keetkkeslqdcLesftkeeelegenkyycekck.........................kkqeaekklklkklPevLilhLkRfsfseeq 243
           ++     s+ d+L+ f+ +e+l+g+nky ce+                           k++ a+k++ + + P+vL+++LkRf    e+
   Q: 196  SS-----SVADALSRFFHPETLDGANKYCCERYAvlylkrnkwfldegfnydfgnvsckKLTSARKQMFMLRAPKVLVIQLKRF----EG 276
           **.....9**************************99999999999999999999999999999*********************....66 PP
   S: 244  ksrekinkkvefpleLdlspfctspeekqkekkkYeLiavvvHsG.slssGHYvayvknekgk.WllfdDskVtevkeeevleetgstaY 331
            +  kin+++ef++ Ldls  + +++++   +  Y+L++ +vHsG s++sGHY+ayvk+   + W++++Ds+V+ ++ ++vl+   ++ Y
   Q: 277  INGGKINRNIEFKEALDLSDCMYNKNQDP--HPVYNLFGCIVHSGlSSESGHYYAYVKDVAIDqWFCCNDSHVSLSSSQNVLS---EKVY 361
           7789***************9999977665..9***************************55444*******************...**** PP
   S: 332  vlfY 335
           +lfY
   Q: 362  ILFY 365
           **** PP

Organism

Zea mays

Protein Sequence
(Fasta)

MAPTAEPSSR PPQWRPRTGP PPGLKNLGNT CYLNSVLQCL ASTPPLATFC LASRHSNQCK 60
KVFPNRDNDC ALCVLERQIA RLLRADAGAL DSPAKVIRCM PLFAEHFRWG RQEDAHEFLR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCCCATCTCT CTTCCAAGCT CTGAGTTCTG ATTCTGACCC AGACGGGGAA TAATCAGACT 60
CCTCGCATCC CCTCTCTTCT CTCTTCACCC CGTCGCCGTC CCGTTACTCG ATTCGAGGGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0378--Hydrolase
KW-1185--Reference proteome

Interpro

IPR001394--Peptidase_C19_UCH
IPR018200--USP_CS
IPR028889--USP_dom

PROSITE

PS00972--USP_1
PS50235--USP_3

Pfam

PF00443--UCH

Gene Ontology

GO:0036459--F:thiol-dependent ubiquitinyl hydrolase activity
GO:0016579--P:protein deubiquitination
GO:0006511--P:ubiquitin-dependent protein catabolic process

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001017	Aegilops tauschii	57.62	2.00e-178	619.00
IUUC-Atr-002832	Amborella trichopoda	47.59	8.00e-110	390.00
IUUC-Aly-005983	Arabidopsis lyrata	38.24	1.00e-112	400.00
IUUC-Ath-006707	Arabidopsis thaliana	38.61	2.00e-112	399.00
IUUC-Bdi-014044	Brachypodium distachyon	62.46	0.00e+00	718.00
IUUC-Bol-016356	Brassica oleracea	37.69	1.00e-108	386.00
IUUC-Bra-018096	Brassica rapa	36.91	2.00e-106	379.00
IUUC-Gma-043410	Glycine max	38.55	5.00e-119	421.00
IUUC-Hvu-047673	Hordeum vulgare	56.95	3.00e-146	511.00
IUUC-Lpe-050888	Leersia perrieri	60.33	0.00e+00	727.00
IUUC-Mtr-058396	Medicago truncatula	40.51	4.00e-115	408.00
IUUC-Mac-065596	Musa acuminata	47.55	7.00e-147	513.00
IUUC-Oba-075223	Oryza barthii	60.64	0.00e+00	712.00
IUUC-Obr-076589	Oryza brachyantha	57.63	0.00e+00	667.00
IUUC-Ogl-077769	Oryza glaberrima	60.64	0.00e+00	712.00
IUUC-Ogu-078416	Oryza glumaepatula	59.16	0.00e+00	651.00
IUUC-Oin-079451	Oryza indica	60.64	0.00e+00	717.00
IUUC-Olo-080569	Oryza longistaminata	60.94	0.00e+00	724.00
IUUC-Ome-081320	Oryza meridionalis	59.68	0.00e+00	656.00
IUUC-Oni-082823	Oryza nivara	59.00	0.00e+00	650.00
IUUC-Opu-083432	Oryza punctata	56.02	0.00e+00	634.00
IUUC-Oru-084652	Oryza rufipogon	54.18	6.00e-163	566.00
IUUC-Osa-085846	Oryza sativa	60.49	0.00e+00	709.00
IUUC-Ppa-095241	Physcomitrella patens	46.70	3.00e-90	325.00
IUUC-Pop-098875	Populus trichocarpa	52.73	7.00e-109	387.00
IUUC-Ppe-101980	Prunus persica	53.79	9.00e-107	380.00
IUUC-Smo-108788	Selaginella moellendorffii	46.97	9.00e-86	309.00
IUUC-Sit-109696	Setaria italica	73.46	0.00e+00	855.00
IUUC-Sly-111085	Solanum lycopersicum	39.36	2.00e-111	396.00
IUUC-Stu-111972	Solanum tuberosum	46.58	4.00e-109	388.00
IUUC-Sbi-114319	Sorghum bicolor	81.21	0.00e+00	1033.00
IUUC-Tca-121693	Theobroma cacao	42.51	1.00e-107	383.00
IUUC-Tae-125372	Triticum aestivum	62.43	0.00e+00	747.00
IUUC-Tur-126469	Triticum urartu	59.62	0.00e+00	666.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence