iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d011483	Zm00001d011483_T036	Zm00001d011483_T036
Zm00001d011483	Zm00001d011483_T030	Zm00001d011483_T030
Zm00001d011483	Zm00001d011483_T022	Zm00001d011483_T022
Zm00001d011483	Zm00001d011483_T001	Zm00001d011483_T001
Zm00001d011483	Zm00001d011483_T031	Zm00001d011483_T031
Zm00001d011483	Zm00001d011483_T048	Zm00001d011483_T048
Zm00001d011483	Zm00001d011483_T019	Zm00001d011483_T019
Zm00001d011483	Zm00001d011483_T002	Zm00001d011483_T002
Zm00001d011483	Zm00001d011483_T003	Zm00001d011483_T003
Zm00001d011483	Zm00001d011483_T004	Zm00001d011483_T004
Zm00001d011483	Zm00001d011483_T009	Zm00001d011483_T009
Zm00001d011483	Zm00001d011483_T007	Zm00001d011483_T007
Zm00001d011483	Zm00001d011483_T005	Zm00001d011483_T005
Zm00001d011483	Zm00001d011483_T046	Zm00001d011483_T046

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.70e-09	37.7	335	368

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtcla.f....sdtllvsGsdDgtikvWD 29
           gH++ + cl  +     + +lvsG++Dg + +W+
   Q: 335  GHKGAIACLMtYmsaaGEVHLVSGGNDGLLILWS 368
           89999***964699954489*************8 PP

Organism

Zea mays

Protein Sequence
(Fasta)

MEMGSELSKT EFGDQGEDSN ILSSRLKEIS TPDRPATLRF LAGLSRPIRP AHFSLLFASF 60
LTVAVAVAAL LVQISPTLPR RHQTSTTSLL PPLCSSPDLQ TPDLCSCPRL PLASDNPAAA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTTGATGATA CTGAAGTCAT CAGTTTTTTG CTGCAAACTG AAATAATTCC TCTGTGCTTA 60
CGAACCATGG AGATGGGTAG TGAGCTATCC AAAACTGTAT GTAGCTAGCC ATATATTCTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0853--WD repeat

Interpro

IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

SMART

SM00320--WD40

Gene Ontology

GO:0016021--C:integral component of membrane

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000321	Aegilops tauschii	69.09	0.00e+00	1212.00
IUUC-Atr-002897	Amborella trichopoda	75.00	0.00e+00	1670.00
IUUC-Aly-006154	Arabidopsis lyrata	73.67	0.00e+00	1705.00
IUUC-Ath-007285	Arabidopsis thaliana	74.16	0.00e+00	1712.00
IUUC-Bdi-014824	Brachypodium distachyon	84.69	0.00e+00	2039.00
IUUC-Bol-016428	Brassica oleracea	73.16	0.00e+00	1706.00
IUUC-Bra-017475	Brassica rapa	73.16	0.00e+00	1699.00
IUUC-Gma-043699	Glycine max	75.79	0.00e+00	1691.00
IUUC-Hvu-047404	Hordeum vulgare	91.93	2.00e-154	538.00
IUUC-Mtr-058798	Medicago truncatula	74.84	0.00e+00	1712.00
IUUC-Mac-065076	Musa acuminata	81.26	0.00e+00	1872.00
IUUC-Oba-075727	Oryza barthii	83.73	0.00e+00	2043.00
IUUC-Obr-076460	Oryza brachyantha	88.75	0.00e+00	2073.00
IUUC-Ogl-077837	Oryza glaberrima	85.95	0.00e+00	2128.00
IUUC-Ogu-078912	Oryza glumaepatula	83.80	0.00e+00	2020.00
IUUC-Oin-079644	Oryza indica	85.88	0.00e+00	2091.00
IUUC-Olo-080463	Oryza longistaminata	83.48	0.00e+00	1759.00
IUUC-Ome-081748	Oryza meridionalis	83.31	0.00e+00	2008.00
IUUC-Oni-083096	Oryza nivara	83.48	0.00e+00	2020.00
IUUC-Opu-083280	Oryza punctata	84.38	0.00e+00	2107.00
IUUC-Oru-084728	Oryza rufipogon	83.66	0.00e+00	2005.00
IUUC-Osa-085295	Oryza sativa	85.88	0.00e+00	2091.00
IUUC-Ppa-095297	Physcomitrella patens	58.65	0.00e+00	1260.00
IUUC-Ppe-101567	Prunus persica	74.75	0.00e+00	1795.00
IUUC-Smo-109297	Selaginella moellendorffii	60.98	0.00e+00	1303.00
IUUC-Sit-109913	Setaria italica	89.58	0.00e+00	2161.00
IUUC-Sly-110980	Solanum lycopersicum	76.24	0.00e+00	1659.00
IUUC-Stu-112643	Solanum tuberosum	76.16	0.00e+00	1663.00
IUUC-Sbi-114411	Sorghum bicolor	93.25	0.00e+00	1698.00
IUUC-Tca-121691	Theobroma cacao	76.07	0.00e+00	1755.00
IUUC-Tae-125302	Triticum aestivum	88.02	0.00e+00	1950.00
IUUC-Tur-126798	Triticum urartu	86.42	0.00e+00	917.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence