iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d012974	Zm00001d012974_T032	Zm00001d012974_T032
Zm00001d012974	Zm00001d012974_T021	Zm00001d012974_T021
Zm00001d012974	Zm00001d012974_T070	Zm00001d012974_T070
Zm00001d012974	Zm00001d012974_T038	Zm00001d012974_T038
Zm00001d012974	Zm00001d012974_T003	Zm00001d012974_T003
Zm00001d012974	Zm00001d012974_T007	Zm00001d012974_T007
Zm00001d012974	Zm00001d012974_T017	Zm00001d012974_T017
Zm00001d012974	Zm00001d012974_T034	Zm00001d012974_T034

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.30e-07	32.9	344	379

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.........sdtllvsGsdDgtikvW 28
           H+++v+++ +         s+ ll++G+ Dg++k+W
   Q: 344  HESWVNAITWqvlsagsskSSLLLATGCSDGSVKIW 379
           ****************87644889************ PP

Organism

Zea mays

Protein Sequence
(Fasta)

MATHYQAATL IASPSYPNAI AWSSDNLVAV ASGHIVTILN PAALDGPRGL VGLRHSDPFP 60
IGVVKREDLL EPCLLPTSLA RETEPCARSI SWSQQGFAPN YGCLLAVCTV NDHVKLYRSP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACCCTCCAGC TCCAGCCGCC AGCCGCCAGC CGCCCACGCC CGGAGCACCG CCGCAACCCG 60
CAGCGCCGCT CGCCCGGAGG CCGGAGCACC GCCGCTCTCC CCGCACGGAG CACCGCCGCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR024764--TFIIIC_Znf
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2

Pfam

PF12660--zf-TFIIIC

SMART

SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003046	Amborella trichopoda	38.95	4.00e-101	362.00
IUUC-Aly-005715	Arabidopsis lyrata	36.81	2.00e-146	512.00
IUUC-Ath-007637	Arabidopsis thaliana	37.67	2.00e-156	546.00
IUUC-Bdi-014902	Brachypodium distachyon	60.20	0.00e+00	978.00
IUUC-Bol-016169	Brassica oleracea	38.07	1.00e-104	373.00
IUUC-Bra-017736	Brassica rapa	39.91	8.00e-154	537.00
IUUC-Gma-043537	Glycine max	39.00	5.00e-116	411.00
IUUC-Hvu-047339	Hordeum vulgare	61.73	9.00e-18	80.90
IUUC-Mtr-058653	Medicago truncatula	37.61	2.00e-156	545.00
IUUC-Mac-065235	Musa acuminata	45.04	1.00e-142	499.00
IUUC-Ppa-095823	Physcomitrella patens	30.14	4.00e-72	265.00
IUUC-Pop-098900	Populus trichocarpa	40.52	0.00e+00	649.00
IUUC-Ppe-101763	Prunus persica	41.94	7.00e-177	613.00
IUUC-Smo-108757	Selaginella moellendorffii	29.86	4.00e-99	355.00
IUUC-Sit-110507	Setaria italica	77.51	0.00e+00	1305.00
IUUC-Sly-111401	Solanum lycopersicum	38.28	8.00e-107	380.00
IUUC-Stu-112879	Solanum tuberosum	38.84	4.00e-92	331.00
IUUC-Tca-121440	Theobroma cacao	41.45	0.00e+00	637.00
IUUC-Tae-125429	Triticum aestivum	61.77	0.00e+00	1000.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence