iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d016165	Zm00001d016165_T049	Zm00001d016165_T049
Zm00001d016165	Zm00001d016165_T085	Zm00001d016165_T085
Zm00001d016165	Zm00001d016165_T039	Zm00001d016165_T039
Zm00001d016165	Zm00001d016165_T056	Zm00001d016165_T056
Zm00001d016165	Zm00001d016165_T002	Zm00001d016165_T002
Zm00001d016165	Zm00001d016165_T047	Zm00001d016165_T047
Zm00001d016165	Zm00001d016165_T057	Zm00001d016165_T057
Zm00001d016165	Zm00001d016165_T033	Zm00001d016165_T033
Zm00001d016165	Zm00001d016165_T012	Zm00001d016165_T012
Zm00001d016165	Zm00001d016165_T036	Zm00001d016165_T036
Zm00001d016165	Zm00001d016165_T070	Zm00001d016165_T070
Zm00001d016165	Zm00001d016165_T006	Zm00001d016165_T006
Zm00001d016165	Zm00001d016165_T075	Zm00001d016165_T075
Zm00001d016165	Zm00001d016165_T041	Zm00001d016165_T041
Zm00001d016165	Zm00001d016165_T016	Zm00001d016165_T016
Zm00001d016165	Zm00001d016165_T032	Zm00001d016165_T032
Zm00001d016165	Zm00001d016165_T027	Zm00001d016165_T027
Zm00001d016165	Zm00001d016165_T030	Zm00001d016165_T030
Zm00001d016165	Zm00001d016165_T001	Zm00001d016165_T001
Zm00001d016165	Zm00001d016165_T044	Zm00001d016165_T044

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	3.40e-75	255.4	438	775

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

DUB/USP

   S: 2    GlkNlgNtCYmNSvLQcLsnipelrellle.kkkeklneenp............................kepkgellkslqklfeelwk 62
           Gl N gN+CY N+vLQcL+ +++l+ +ll   +++++n   +                             +++ +l+++l++  + l  
   Q: 438  GLFNCGNSCYANAVLQCLMCTKPLMIYLLLrLHSKDCNTIISnscphplleilmctlyfflfdlsyyfigCSKNWCLMCELEQYASTL-R 526
           9************************99988566666665444667788888888888888888888888777777**********999.9 PP
   S: 63   skkkavsprellkalkkeaeefsgyeqqDaqEflaflldqleeelkkeknkpkeeeeeedkselsdeaeekkkkknkslisdlFqgqlks 152
           ++ +  sp+++l+ l+++  ++ g  q+Da+Efl++l+ +++ ++                  l  e+  ++  ++++li+++F+g+lks
   Q: 527  ESGGPLSPSRILSNLRNIGCRLGGGTQEDAHEFLRHLVMSMQAAC---------------LDGLGGEKHVEPSLQETTLIQQMFGGRLKS 601
           999******************************************...............235666688999****************** PP
   S: 153  qikclecdnvssreepfldlslpvpgkeetkkeslqdcLesftkeeelegenkyycekckkkqeaekklklkklPevLilhLkRfsfsee 242
           ++kcl+c ++s+r+e+ +dl+l+++g  e    slqd+L +ft++e l+g+n+y+c +c ++++a+k+l+++++P++L++ LkRf    +
   Q: 602  KVKCLRCYHESERYENIMDLTLEIHGWVE----SLQDALTQFTAPEDLDGDNMYKCGRCSAYVKARKQLSVHEVPNILTVVLKRF----Q 683
           **************************997....8***************************************************....3 PP
   S: 243  qksrekinkkvefpleLdlspfctspeekqkekkkYeLiavvvHsG...slssGHYvayvknekgkWllfdDskVtevkeeevleetgst 329
            ++  kink+v+fp++Ld+ pf+t + ++   +  Y L+avvvH      + sGHY++yvk+ +g Wl++dDs+V++v+ ++v +   + 
   Q: 684  SGKYGKINKCVTFPDMLDMVPFVTGSGDN---PPLYFLYAVVVHVDtenASFSGHYISYVKDMQGTWLRIDDSEVQVVSVNQVMS---EG 767
           46678********************6655...9***********885423559********************************...** PP
   S: 330  aYvlfYkr 337
           aY+lfY r
   Q: 768  AYMLFYLR 775
           ******76 PP

Organism

Zea mays

Protein Sequence
(Fasta)

MLQPREADVP ALFLVFIVLP VVAYFLLGRW HDSASKKARA SVLAQRAAEE AYREETMACP 60
DIIPPGPSLR TMPYFKPAPS LRQEYHECAT CHAPAKTRCS RCKSVRYCSG KCQIVHWRQG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GAGCGCAGAG ACGGCAGAGA GCACAGTAGC CAAGCGAGTG GAGGAGAGTT GGAGACTCAT 60
CACTGGAGAG CATCCGAAGC CGCCCAGTGC TCGCACAACC GCTCCCGATT CCCAACCCCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0378--Hydrolase
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001394--Peptidase_C19_UCH
IPR018200--USP_CS
IPR028889--USP_dom
IPR002893--Znf_MYND

PROSITE

PS00972--USP_1
PS50235--USP_3
PS50865--ZF_MYND_2

Pfam

PF00443--UCH
PF01753--zf-MYND

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0046872--F:metal ion binding
GO:0036459--F:thiol-dependent ubiquitinyl hydrolase activity
GO:0016579--P:protein deubiquitination
GO:0006511--P:ubiquitin-dependent protein catabolic process

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Bdi-014717	Brachypodium distachyon	76.89	0.00e+00	1463.00
IUUC-Lpe-051615	Leersia perrieri	73.87	0.00e+00	1345.00
IUUC-Oba-075960	Oryza barthii	75.64	0.00e+00	1375.00
IUUC-Obr-076330	Oryza brachyantha	75.59	0.00e+00	1407.00
IUUC-Ogl-077370	Oryza glaberrima	76.98	0.00e+00	1394.00
IUUC-Ogu-078615	Oryza glumaepatula	75.54	0.00e+00	1376.00
IUUC-Oin-079409	Oryza indica	76.69	0.00e+00	1154.00
IUUC-Olo-080550	Oryza longistaminata	75.00	0.00e+00	1232.00
IUUC-Ome-081508	Oryza meridionalis	74.70	0.00e+00	1399.00
IUUC-Oni-082740	Oryza nivara	75.54	0.00e+00	1372.00
IUUC-Oru-084502	Oryza rufipogon	75.54	0.00e+00	1372.00
IUUC-Osa-085475	Oryza sativa	76.88	0.00e+00	1390.00
IUUC-Sit-109825	Setaria italica	86.56	0.00e+00	1693.00
IUUC-Sbi-114225	Sorghum bicolor	91.85	0.00e+00	1764.00
IUUC-Tur-126234	Triticum urartu	73.70	0.00e+00	1288.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence