iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d017595	Zm00001d017595_T005	Zm00001d017595_T005
Zm00001d017595	Zm00001d017595_T002	Zm00001d017595_T002
Zm00001d017595	Zm00001d017595_T007	Zm00001d017595_T007
Zm00001d017595	Zm00001d017595_T001	Zm00001d017595_T001
Zm00001d017595	Zm00001d017595_T003	Zm00001d017595_T003
Zm00001d017595	Zm00001d017595_T006	Zm00001d017595_T006

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.50e-21	76.0	142	178

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf...sdtllvsGsdDgtikvWDlrtgvl 35
           gH+ +vt++a+   s + l sGs Dgt+++WD  tg +
   Q: 142  GHEQGVTGIALpagS-DKLYSGSKDGTVRMWDCQTGQC 178
           8**********9754.899***************9988 PP

Organism

Zea mays

Protein Sequence
(Fasta)

MDIEADGRFG NKRVHNRLGP GSGGAPPSTN GKVCNYWRAG RCNRFPCPFL HSELPEAAPP 60
KRPTGPGGNV WRNPNTGGRG GGHHNRWGKG PGGGSGIASH KPPERPCKYF LAGTECSYGE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCAACCAGTA GCCGGAGTCC GAAGTCGGGC CCTCCCTTCT GCCCGCGACC GCGTTAGCTA 60
AACCCGACCC AGCAACCAGG CCACCGCTCC TTTCCTCTCC GATCCGGATC TCCCCACCCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR000571--Znf_CCCH

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
PS50103--ZF_C3H1

Pfam

PF00400--WD40
PF00642--zf-CCCH

SMART

SM00320--WD40
SM00356--ZnF_C3H1

Gene Ontology

GO:0046872--F:metal ion binding

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002831	Amborella trichopoda	53.71	3.00e-134	471.00
IUUC-Aly-005699	Arabidopsis lyrata	54.60	2.00e-140	491.00
IUUC-Ath-007001	Arabidopsis thaliana	53.68	7.00e-142	496.00
IUUC-Bdi-014857	Brachypodium distachyon	75.38	0.00e+00	667.00
IUUC-Bol-016382	Brassica oleracea	53.53	9.00e-140	489.00
IUUC-Bra-017351	Brassica rapa	54.72	8.00e-143	499.00
IUUC-Gma-042894	Glycine max	55.17	1.00e-135	475.00
IUUC-Hvu-047824	Hordeum vulgare	73.25	4.00e-153	533.00
IUUC-Lpe-051596	Leersia perrieri	59.35	7.00e-140	489.00
IUUC-Mtr-058068	Medicago truncatula	56.26	2.00e-134	471.00
IUUC-Mac-065071	Musa acuminata	61.84	1.00e-161	562.00
IUUC-Oba-075769	Oryza barthii	59.91	2.00e-141	494.00
IUUC-Obr-076011	Oryza brachyantha	75.32	0.00e+00	681.00
IUUC-Ogu-078248	Oryza glumaepatula	61.08	2.00e-147	514.00
IUUC-Oin-079981	Oryza indica	76.56	0.00e+00	686.00
IUUC-Olo-080571	Oryza longistaminata	58.64	3.00e-132	464.00
IUUC-Ome-081598	Oryza meridionalis	60.00	9.00e-145	505.00
IUUC-Oni-082711	Oryza nivara	60.22	3.00e-145	507.00
IUUC-Opu-083451	Oryza punctata	77.47	0.00e+00	691.00
IUUC-Oru-085129	Oryza rufipogon	59.91	2.00e-141	495.00
IUUC-Osa-085619	Oryza sativa	73.37	2.00e-146	511.00
IUUC-Ppa-096012	Physcomitrella patens	49.45	3.00e-102	364.00
IUUC-Pop-099994	Populus trichocarpa	53.01	6.00e-138	483.00
IUUC-Ppe-101609	Prunus persica	56.96	8.00e-148	516.00
IUUC-Smo-108900	Selaginella moellendorffii	44.37	3.00e-96	345.00
IUUC-Sit-109731	Setaria italica	86.21	0.00e+00	723.00
IUUC-Sly-111514	Solanum lycopersicum	52.94	6.00e-131	459.00
IUUC-Stu-112646	Solanum tuberosum	52.83	1.00e-135	475.00
IUUC-Sbi-114748	Sorghum bicolor	86.68	0.00e+00	782.00
IUUC-Tca-121658	Theobroma cacao	53.51	1.00e-132	465.00
IUUC-Tae-125577	Triticum aestivum	75.76	0.00e+00	673.00
IUUC-Tur-126095	Triticum urartu	73.25	5.00e-124	437.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence