iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d017883	Zm00001d017883_T020	Zm00001d017883_T020
Zm00001d017883	Zm00001d017883_T026	Zm00001d017883_T026
Zm00001d017883	Zm00001d017883_T018	Zm00001d017883_T018
Zm00001d017883	Zm00001d017883_T013	Zm00001d017883_T013
Zm00001d017883	Zm00001d017883_T023	Zm00001d017883_T023
Zm00001d017883	Zm00001d017883_T009	Zm00001d017883_T009
Zm00001d017883	Zm00001d017883_T015	Zm00001d017883_T015
Zm00001d017883	Zm00001d017883_T017	Zm00001d017883_T017
Zm00001d017883	Zm00001d017883_T032	Zm00001d017883_T032
Zm00001d017883	Zm00001d017883_T016	Zm00001d017883_T016
Zm00001d017883	Zm00001d017883_T004	Zm00001d017883_T004
Zm00001d017883	Zm00001d017883_T029	Zm00001d017883_T029

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.00e-15	57.7	365	401

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf....sdtllvsGsdDgtikvWDlrtgvl 35
           H ++vt+l+     s t+l+sGs Dg++k+WD r++v+
   Q: 365  HDGDVTDLSIsqwmS-TRLASGSKDGSVKIWDDRKQVP 401
           9999***96654365.99**************888876 PP

Organism

Zea mays

Protein Sequence
(Fasta)

MASPSGNPNP NPNTPFEIGK LFRPPNPMTT ATPNPIFPGV AGGPTGSPPP SGPYSYPPVT 60
PPFHRGPYIH YQQDPHAMAR PVVSFPMPNP NLNPNPNPNA NPNAASPGPN PGARLMQLLG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCCTGTTCCC CAGTCCAGAT CTACTCCACT GCCACCTCCT CTCCCTTTCC CTCTCCTCTC 60
CCGAGCCTGC CTCTCATGGC GTCTCCAAGC GGAAACCCTA ACCCTAATCC CAATACACCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR032401--EDC4_WD40
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF16529--Ge1_WD40

SMART

SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000944	Aegilops tauschii	71.78	0.00e+00	1727.00
IUUC-Aly-005827	Arabidopsis lyrata	48.04	0.00e+00	1017.00
IUUC-Ath-006603	Arabidopsis thaliana	47.80	0.00e+00	1019.00
IUUC-Bdi-014662	Brachypodium distachyon	72.33	0.00e+00	1808.00
IUUC-Bol-015150	Brassica oleracea	48.95	0.00e+00	983.00
IUUC-Bra-017673	Brassica rapa	48.85	0.00e+00	993.00
IUUC-Gma-044374	Glycine max	51.38	0.00e+00	1068.00
IUUC-Hvu-047830	Hordeum vulgare	74.26	0.00e+00	1801.00
IUUC-Lpe-051585	Leersia perrieri	73.11	0.00e+00	1718.00
IUUC-Loc-051778	Lepisosteus oculatus	25.49	1.00e-19	92.40
IUUC-Mtr-057751	Medicago truncatula	53.83	4.00e-173	602.00
IUUC-Mac-064436	Musa acuminata	56.71	0.00e+00	1320.00
IUUC-Oba-075599	Oryza barthii	65.27	0.00e+00	1605.00
IUUC-Obr-076430	Oryza brachyantha	74.44	0.00e+00	1770.00
IUUC-Ogl-077350	Oryza glaberrima	73.63	0.00e+00	1818.00
IUUC-Ogu-079010	Oryza glumaepatula	65.27	0.00e+00	1592.00
IUUC-Oin-079418	Oryza indica	74.91	0.00e+00	1684.00
IUUC-Olo-080844	Oryza longistaminata	71.75	0.00e+00	1657.00
IUUC-Ome-081610	Oryza meridionalis	64.92	0.00e+00	1594.00
IUUC-Oni-082323	Oryza nivara	73.45	0.00e+00	1791.00
IUUC-Opu-084175	Oryza punctata	73.27	0.00e+00	1768.00
IUUC-Oru-084677	Oryza rufipogon	72.55	0.00e+00	1770.00
IUUC-Osa-085798	Oryza sativa	73.70	0.00e+00	1816.00
IUUC-Pop-100004	Populus trichocarpa	50.36	0.00e+00	1099.00
IUUC-Ppe-101310	Prunus persica	48.82	8.00e-149	521.00
IUUC-Sit-110590	Setaria italica	84.39	0.00e+00	2201.00
IUUC-Sly-111353	Solanum lycopersicum	47.45	0.00e+00	1027.00
IUUC-Sbi-114653	Sorghum bicolor	91.29	0.00e+00	2256.00
IUUC-Tca-121627	Theobroma cacao	52.08	0.00e+00	1138.00
IUUC-Tae-125495	Triticum aestivum	72.48	0.00e+00	1843.00
IUUC-Tur-126066	Triticum urartu	72.87	0.00e+00	1646.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence