iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Zma-135401

UUCD1 version

UUC-ZeM-00487

Ensembl Protein ID

Zm00001d018207_T001

UniProt Accession

A0A1D6HLL0; A0A1D6HLL0_MAIZE

Genbank Protein ID

AQK75277.1

Protein Name

Ubiquitin ligase protein COP1

Genbank Nucleotide ID

CM000781

Gene Name

ZEAMMB73_Zm00001d018207

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d018207	Zm00001d018207_T001	Zm00001d018207_T001

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.10e-26	93.7	565	602
E3 activity/RING/U-box	5.50e-07	31.6	65	126
UBD/Beta-Prp	2.10e-41	144.1	389	689

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sdtllvsGsdDgtikvWDlrtgvllk 37
           gH+  v+ ++f s++ l+s+s D t+++WD++++ +++
   Q: 565  GHKKAVSYVKFlSNNELASASTDSTLRLWDVKDNCPVR 602
           8999*******9889****************9998876 PP

E3 activity/RING/U-box

   S: 5    eflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqa 67
           ++lCpI + + +d   +++G+++   +I  +l+++   cP +++ lt+ +l Pn  l ++ ++
   Q: 65   DLLCPICMAVIKDAFLTACGHSFCYMCIVTHLSNKSD-CPCCGHYLTKAQLYPNFLLDKVLKK 126
           689*****************************99999.****************998777666 PP

UBD/Beta-Prp

   S: 10   ksvitcvkfspdksllatgsrdgtikvwdvttgkl........lrslsgheaevtavkfspdgk.ilvtgseDrtikvwdlstgkcvhtl 90
            + ++++ f +d++l+at++ +++ikv++++t           + ++   + + +++++++ +k i++++   +++ vwd++t++ v+ +
   Q: 389  ANIVSSIEFDRDDELFATAGVSKRIKVFEFSTVVNepsdvhcpVVEMATRS-KLSCLSWNKYSKnIIASSDYEGIVTVWDVQTRQSVMEY 477
           567899**************************5447777666655554444.599**9999876466666666***************** PP
   S: 91   kghedsvlslsfspsg.dklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktg.kllrtltg 177
           ++he++++s++fs+++ + lvsGs+d  ++vw ++++  +  ++   ++ +++v+++p + ++++ Gs+D  +  +dl++  + ++ + g
   Q: 478  EEHEKRAWSVDFSRTDsSMLVSGSDDCKVKVWCTNQEASV--INIDMKANICSVKYNPGSsFYVAVGSADHHIHYFDLRNPsSPVHIFGG 565
           **************666***************77777777..56666666*********99*****************886156899977 PP
   S: 178  ghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhn... 264
            h+++v  ++f sn +el+s+s+d+t++lwd++ +  vrt++gh++  + v +s n+e++++gs+ + ++++   ++ + k  + h+   
   Q: 566  -HKKAVSYVKFLSN-NELASASTDSTLRLWDVKDNCPVRTFRGHKNEKNFVGLSVNNEYIACGSETNEVFVY---HKAISKPAASHRfvs 650
           .************8.7*******************99**********************************9...677777777777888 PP
   S: 265  ...........ssvisvavlsfgdnvlvlgsedskvniw 292
                      s +is  +++ + + ++++ + ++++++
   Q: 651  sdlddadddpgSYFISAVCWKSDSPTMLTANSQGTIKVL 689
           88999*****999999999*****************997 PP

Organism

Zea mays

Protein Sequence
(Fasta)

MGDSSVAGAL VPSVPKPEPA PSGDTSAAAA ATTAALAMPE EAGMRAASAS PQGPAEEGEG 60
PADRDLLCPI CMAVIKDAFL TACGHSFCYM CIVTHLSNKS DCPCCGHYLT KAQLYPNFLL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATCGTCGGTT GGTGCGCGCG GCGCGTCTGG CGTGCAGCGG CGGCACGACA CGCAACTAGC 60
GCGAGGAGGG CGCGGCAGCA GCCGCTCCAG TCGACTTCTC CGACGTGGTC TCCTCCCACC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0436--Ligase
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00400--WD40

SMART

SM00184--RING
SM00320--WD40

Gene Ontology

GO:0008270--F:zinc ion binding

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ame-011176	Astyanax mexicanus	54.55	2.00e-38	153.00
IUUC-Bdi-014152	Brachypodium distachyon	86.29	0.00e+00	1207.00
IUUC-Ggo-044430	Gorilla gorilla	35.08	6.00e-78	284.00
IUUC-Lpe-051219	Leersia perrieri	88.32	0.00e+00	1209.00
IUUC-Meu-056595	Macropus eugenii	38.97	1.00e-57	217.00
IUUC-Oba-075149	Oryza barthii	88.42	0.00e+00	1246.00
IUUC-Obr-076563	Oryza brachyantha	92.25	0.00e+00	1215.00
IUUC-Ogl-077701	Oryza glaberrima	88.74	0.00e+00	1253.00
IUUC-Ogu-078383	Oryza glumaepatula	88.74	0.00e+00	1253.00
IUUC-Oin-079965	Oryza indica	87.58	0.00e+00	1127.00
IUUC-Olo-080639	Oryza longistaminata	90.02	0.00e+00	1202.00
IUUC-Ome-081821	Oryza meridionalis	92.29	0.00e+00	1140.00
IUUC-Oni-082622	Oryza nivara	88.74	0.00e+00	1253.00
IUUC-Opu-083295	Oryza punctata	90.19	0.00e+00	1258.00
IUUC-Oru-084661	Oryza rufipogon	88.74	0.00e+00	1253.00
IUUC-Osa-085766	Oryza sativa	88.74	0.00e+00	1253.00
IUUC-Sit-110248	Setaria italica	92.68	0.00e+00	1279.00
IUUC-Sbi-113962	Sorghum bicolor	92.97	0.00e+00	1313.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence