iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Hvu-047331

Ensembl Protein ID

MLOC_38227.2

UniProt Accession

M0VXK6; M0VXK6_HORVV

Protein Name

Ribosome biogenesis protein WDR12 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
MLOC_38227	MLOC_38227.2	MLOC_38227.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.70e-33	112.9	236	271

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclafsd.tllvsGsdDgtikvWDlrtgvl 35
           gHt  v+++a+++ +++ s+s+D++++ WD  tg+ 
   Q: 236  GHTQCVSSVAWPEqRTIYSASWDHSVRQWDAQTGRE 271
           8**********88899**************999875 PP

Organism

Hordeum vulgare

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MGLSEIVNSL LLSAEPDHQA QPFDFIVDGE LVRMPLHQFL LAKGISAERV LELEYIKAVA 60
PRKQEPPLPH DDWVSAVDGS NPSFILTGCY DGLARVWKDA AVCTQVLEGH SGAITSASFI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCGCCCCCCG CCATCGCGGT CCCCGCCGAG CTCTCCCGCA TGGGCCTCTC CGAGATCGTC 60
AACAGCCTCC TCCTCTCCGG TGAGCGCGGC ATCCGCATCC GGACCCTAGC CCTGACCTCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0009506--C:plasmodesma
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	97.24	0.00e+00	797.00
IUUC-Aml-001997	Ailuropoda melanoleuca	34.36	7.00e-54	203.00
IUUC-Atr-002544	Amborella trichopoda	61.96	2.00e-145	507.00
IUUC-Apl-003981	Anas platyrhynchos	34.57	2.00e-57	214.00
IUUC-Aca-004370	Anolis carolinensis	33.16	3.00e-60	224.00
IUUC-Aly-006455	Arabidopsis lyrata	65.25	5.00e-160	555.00
IUUC-Ath-006669	Arabidopsis thaliana	64.75	8.00e-155	538.00
IUUC-Ago-007864	Ashbya gossypii	30.89	4.00e-43	167.00
IUUC-Acl-008177	Aspergillus clavatus	29.82	5.00e-38	150.00
IUUC-Afl-008617	Aspergillus flavus	29.50	9.00e-34	136.00
IUUC-Afu-008752	Aspergillus fumigatus	28.65	8.00e-34	136.00
IUUC-Ani-009136	Aspergillus nidulans	30.75	4.00e-39	154.00
IUUC-Ang-009701	Aspergillus niger	29.66	9.00e-36	143.00
IUUC-Aor-009884	Aspergillus oryzae	29.32	5.00e-34	137.00
IUUC-Ame-011432	Astyanax mexicanus	34.10	1.00e-62	232.00
IUUC-Bgr-012218	Blumeria graminis	28.19	2.00e-34	139.00
IUUC-Bta-012829	Bos taurus	33.33	9.00e-54	202.00
IUUC-Bci-013953	Botrytis cinerea	29.06	7.00e-34	137.00
IUUC-Bdi-014351	Brachypodium distachyon	89.95	0.00e+00	717.00
IUUC-Bol-016514	Brassica oleracea	65.75	4.00e-148	516.00
IUUC-Bra-016988	Brassica rapa	66.00	5.00e-149	519.00
IUUC-Cel-018569	Caenorhabditis elegans	24.35	2.00e-21	95.90
IUUC-Cja-019468	Callithrix jacchus	34.10	9.00e-52	196.00
IUUC-Cfa-020471	Canis familiaris	33.16	1.00e-51	195.00
IUUC-Cpo-022260	Cavia porcellus	35.13	7.00e-54	203.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	36.56	8.00e-53	199.00
IUUC-Csa-023989	Chlorocebus sabaeus	33.85	7.00e-52	196.00
IUUC-Cho-024426	Choloepus hoffmanni	30.62	2.00e-39	155.00
IUUC-Cin-025789	Ciona intestinalis	32.83	3.00e-51	194.00
IUUC-Cne-027063	Cryptococcus neoformans	25.61	3.00e-21	95.10
IUUC-Dre-027907	Danio rerio	34.36	1.00e-62	232.00
IUUC-Dno-029225	Dasypus novemcinctus	33.85	7.00e-54	203.00
IUUC-Dor-031082	Dipodomys ordii	31.53	2.00e-22	98.60
IUUC-Dse-031308	Dothistroma septosporum	32.79	5.00e-45	174.00
IUUC-Dme-032189	Drosophila melanogaster	29.34	2.00e-41	162.00
IUUC-Ete-032247	Echinops telfairi	31.54	5.00e-47	180.00
IUUC-Eca-034285	Equus caballus	34.10	2.00e-53	201.00
IUUC-Eeu-035322	Erinaceus europaeus	29.33	3.00e-42	164.00
IUUC-Fca-036114	Felis catus	33.85	4.00e-53	201.00
IUUC-Fal-036891	Ficedula albicollis	34.23	6.00e-51	193.00
IUUC-Fox-037965	Fusarium oxysporum	26.12	1.00e-29	122.00
IUUC-Fso-038244	Fusarium solani	26.29	5.00e-33	134.00
IUUC-Gmo-039040	Gadus morhua	33.76	2.00e-63	234.00
IUUC-Ggr-040093	Gaeumannomyces graminis	22.41	6.00e-22	97.40
IUUC-Gga-040610	Gallus gallus	34.78	5.00e-59	220.00
IUUC-Gac-042117	Gasterosteus aculeatus	32.66	6.00e-60	223.00
IUUC-Gma-043967	Glycine max	64.66	6.00e-155	539.00
IUUC-Ggo-045179	Gorilla gorilla	33.59	3.00e-51	194.00
IUUC-Hsa-046114	Homo sapiens	33.85	9.00e-52	196.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	34.10	4.00e-54	204.00
IUUC-Kpa-049304	Komagataella pastoris	28.37	1.00e-37	149.00
IUUC-Lch-050655	Latimeria chalumnae	31.37	2.00e-38	151.00
IUUC-Lpe-051675	Leersia perrieri	83.67	0.00e+00	695.00
IUUC-Loc-052868	Lepisosteus oculatus	34.69	1.00e-62	232.00
IUUC-Lma-053258	Leptosphaeria maculans	31.50	2.00e-38	154.00
IUUC-Laf-053993	Loxodonta africana	34.10	5.00e-54	203.00
IUUC-Mcc-055128	Macaca mulatta	26.09	4.00e-30	124.00
IUUC-Meu-056501	Macropus eugenii	33.04	2.00e-47	181.00
IUUC-Mor-057114	Magnaporthe oryzae	28.82	4.00e-34	137.00
IUUC-Mpo-057463	Magnaporthe poae	30.66	3.00e-14	70.50
IUUC-Mtr-058367	Medicago truncatula	62.16	6.00e-143	499.00
IUUC-Mla-059107	Melampsora laricipopulina	25.86	6.00e-34	137.00
IUUC-Mga-059745	Meleagris gallopavo	34.35	3.00e-58	218.00
IUUC-Mvi-060362	Microbotryum violaceum	25.79	8.00e-26	110.00
IUUC-Mdo-062257	Monodelphis domestica	34.27	4.00e-59	220.00
IUUC-Mmu-063546	Mus musculus	32.90	3.00e-53	201.00
IUUC-Mac-065540	Musa acuminata	71.43	8.00e-173	598.00
IUUC-Mpu-066284	Mustela putorius furo	33.59	3.00e-53	201.00
IUUC-Mlu-067241	Myotis lucifugus	34.36	3.00e-54	204.00
IUUC-Nfi-068260	Neosartorya fischeri	29.87	5.00e-36	144.00
IUUC-Ncr-068719	Neurospora crassa	28.35	3.00e-28	118.00
IUUC-Nle-068981	Nomascus leucogenys	34.10	6.00e-51	193.00
IUUC-Opr-071218	Ochotona princeps	32.80	4.00e-49	187.00
IUUC-Ont-071646	Oreochromis niloticus	32.65	1.00e-54	205.00
IUUC-Oan-073453	Ornithorhynchus anatinus	34.27	2.00e-62	231.00
IUUC-Ocu-074008	Oryctolagus cuniculus	34.10	5.00e-54	203.00
IUUC-Oba-075712	Oryza barthii	70.60	5.00e-160	555.00
IUUC-Obr-076721	Oryza brachyantha	82.91	0.00e+00	687.00
IUUC-Ogl-077229	Oryza glaberrima	83.17	0.00e+00	690.00
IUUC-Ogu-078977	Oryza glumaepatula	71.11	3.00e-161	560.00
IUUC-Oin-079683	Oryza indica	83.67	0.00e+00	693.00
IUUC-Olo-080291	Oryza longistaminata	72.04	1.00e-125	440.00
IUUC-Ome-081834	Oryza meridionalis	84.17	0.00e+00	697.00
IUUC-Oni-082507	Oryza nivara	80.40	0.00e+00	655.00
IUUC-Opu-083396	Oryza punctata	82.91	0.00e+00	691.00
IUUC-Oru-085220	Oryza rufipogon	80.65	0.00e+00	657.00
IUUC-Osa-085767	Oryza sativa	83.67	0.00e+00	693.00
IUUC-Ola-087420	Oryzias latipes	33.33	2.00e-62	231.00
IUUC-Olu-087740	Ostreococcus lucimarinus	32.58	1.00e-54	206.00
IUUC-Oga-088264	Otolemur garnettii	33.16	1.00e-51	196.00
IUUC-Oar-089335	Ovis aries	33.59	2.00e-54	205.00
IUUC-Ptr-091320	Pan troglodytes	33.85	9.00e-52	196.00
IUUC-Pan-092833	Papio anubis	33.59	1.00e-51	196.00
IUUC-Psi-093504	Pelodiscus sinensis	32.82	2.00e-54	205.00
IUUC-Pma-094189	Petromyzon marinus	35.19	4.00e-57	213.00
IUUC-Pno-094929	Phaeosphaeria nodorum	29.75	2.00e-37	149.00
IUUC-Ppa-095429	Physcomitrella patens	50.13	8.00e-114	402.00
IUUC-Pfo-096337	Poecilia formosa	33.85	2.00e-61	228.00
IUUC-Pab-097571	Pongo abelii	33.85	8.00e-52	196.00
IUUC-Pop-099977	Populus trichocarpa	66.08	1.00e-155	541.00
IUUC-Pca-100394	Procavia capensis	32.05	1.00e-44	172.00
IUUC-Ppe-101848	Prunus persica	63.07	5.00e-155	539.00
IUUC-Pva-102921	Pteropus vampyrus	31.96	3.00e-21	94.70
IUUC-Pgr-103637	Puccinia graminis	27.27	8.00e-35	140.00
IUUC-Ptt-103781	Puccinia triticina	28.64	7.00e-34	137.00
IUUC-Pte-104135	Pyrenophora teres	29.79	5.00e-39	155.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	29.53	3.00e-39	154.00
IUUC-Rno-105114	Rattus norvegicus	33.16	5.00e-53	200.00
IUUC-Sce-106401	Saccharomyces cerevisiae	29.84	6.00e-43	167.00
IUUC-Sha-107122	Sarcophilus harrisii	34.62	7.00e-59	219.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	29.76	9.00e-37	146.00
IUUC-Spo-108134	Schizosaccharomyces pombe	27.18	8.00e-33	133.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	28.10	8.00e-37	146.00
IUUC-Smo-108720	Selaginella moellendorffii	50.51	2.00e-112	397.00
IUUC-Sit-110354	Setaria italica	87.19	0.00e+00	734.00
IUUC-Sly-111023	Solanum lycopersicum	58.84	2.00e-141	494.00
IUUC-Stu-112778	Solanum tuberosum	64.74	6.00e-149	518.00
IUUC-Sar-113596	Sorex araneus	30.48	8.00e-41	159.00
IUUC-Sbi-114193	Sorghum bicolor	83.67	0.00e+00	691.00
IUUC-Sre-115002	Sporisorium reilianum	28.97	9.00e-16	77.00
IUUC-Ssc-116066	Sus scrofa	33.59	1.00e-53	202.00
IUUC-Tgu-117048	Taeniopygia guttata	34.92	2.00e-56	211.00
IUUC-Tni-119820	Tetraodon nigroviridis	34.53	2.00e-58	218.00
IUUC-Tca-121605	Theobroma cacao	65.83	7.00e-158	548.00
IUUC-Tre-121947	Trichoderma reesei	25.17	6.00e-30	124.00
IUUC-Tvi-122481	Trichoderma virens	25.17	4.00e-30	124.00
IUUC-Tae-123504	Triticum aestivum	97.49	0.00e+00	799.00
IUUC-Tur-126586	Triticum urartu	97.24	0.00e+00	795.00
IUUC-Tme-126900	Tuber melanosporum	31.45	4.00e-44	171.00
IUUC-Tbe-127736	Tupaia belangeri	36.36	3.00e-20	91.30
IUUC-Ttr-129041	Tursiops truncatus	29.82	8.00e-39	153.00
IUUC-Uma-129628	Ustilago maydis	24.48	3.00e-08	52.00
IUUC-Vpa-130260	Vicugna pacos	33.85	8.00e-54	202.00
IUUC-Vvi-131009	Vitis vinifera	68.42	3.00e-166	576.00
IUUC-Xtr-132083	Xenopus tropicalis	35.29	2.00e-58	218.00
IUUC-Xma-133094	Xiphophorus maculatus	32.91	2.00e-60	224.00
IUUC-Yli-134531	Yarrowia lipolytica	25.93	4.00e-26	111.00
IUUC-Zma-135509	Zea mays	83.17	0.00e+00	692.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence