iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d022614	Zm00001d022614_T001	Zm00001d022614_T001
Zm00001d022614	Zm00001d022614_T003	Zm00001d022614_T003

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.30e-34	116.7	214	253
UBD/Beta-Prp	4.30e-42	146.3	111	332

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tllvsGsdDgtikvWDlrtgvllks 38
           H+d v ++a+   d +++ s +dD+++++WDlrt+++++s
   Q: 214  HEDLVEDVAWhlKDeHIFGSVGDDCKLMMWDLRTNKPEQS 253
           9***********776999******************9986 PP

UBD/Beta-Prp

   S: 46   rslsgheaevtavkfspdgkilvtgseD.rtikvwdls......tgkcvhtlkghedsvlslsfsp.sgdklvsGshdrtirvwdletgq 127
           +++  h +ev+  ++ p++++ v + +  + ++v+ l       ++   ++lkghe++ + ls+sp +  +l+sGs d+ i +wd+++g+
   Q: 111  SRVAPHRGEVNRARCMPQRPYTVATKTCvDEVHVYHLGdddgsgKSGAEVVLKGHEAEGYGLSWSPmKEGWLLSGSYDKKICLWDISSGS 200
           56666777777777777777777777666778888444444556666778999*************666******************998 PP
   S: 128  clee.....tlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsng.kelvsgsldgtvklwdlq 210
                    ++  h+++v  v++h ++  ++ s ++D ++++Wdl+t+k  +     h + v+slsf++     l+++s d+t++l+d++
   Q: 201  GAPVldaqqVFVAHEDLVEDVAWHLKDeHIFGSVGDDCKLMMWDLRTNKPEQSILA-HRKEVNSLSFNPFNeWILATASGDTTINLFDMR 289
           7766668889999***********999999************************98.*********99955378999************9 PP
   S: 211  .tgecvrtlnghtdnvksvrfspn.derlvsgssDgsiriWdl 251
             ++ ++t+  h++ v +v+  pn  + l+s ++D+ + iWd+
   Q: 290  kLSRSLHTFDSHEAEVFQVEWNPNlATVLASSAADKRVMIWDI 332
           745569****************66378888899********97 PP

Organism

Zea mays

Protein Sequence
(Fasta)

MDGGSSTPAS PPPTVSASAA NMEEYRNWKK NAAVLYDLVI SHPLEWPSLT VQWLPSESSA 60
RSHRLVVGTH TSDEAPNNLM VLDAVLPLPP RLAAAVAASG GAVPFPSVSV SRVAPHRGEV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTGATCGGAT CACCAGGCTT CCATCCCGGC GGCGGCTTTA GCTCCTTCGG GAACATGGGT 60
GGCAAGGTGT TTGGTAGCCT CGACGGCCCC TCCTGTGGTG CCTCATACAG CGGCGCAACC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR022052--Histone-bd_RBBP4_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12265--CAF1C_H4-bd
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000234	Aegilops tauschii	76.52	5.00e-119	420.00
IUUC-Bdi-014769	Brachypodium distachyon	77.04	9.00e-174	602.00
IUUC-Gma-043256	Glycine max	56.53	2.00e-112	398.00
IUUC-Lpe-051076	Leersia perrieri	71.56	9.00e-167	578.00
IUUC-Mac-065473	Musa acuminata	63.85	1.00e-126	445.00
IUUC-Oba-075939	Oryza barthii	76.44	8.00e-160	555.00
IUUC-Obr-076642	Oryza brachyantha	81.30	6.00e-173	599.00
IUUC-Ogl-077012	Oryza glaberrima	81.09	8.00e-165	572.00
IUUC-Ogu-078437	Oryza glumaepatula	82.21	2.00e-166	578.00
IUUC-Oin-079872	Oryza indica	80.95	2.00e-166	577.00
IUUC-Olo-080709	Oryza longistaminata	84.07	6.00e-131	459.00
IUUC-Ome-081189	Oryza meridionalis	81.70	6.00e-163	566.00
IUUC-Oni-082852	Oryza nivara	82.21	1.00e-167	582.00
IUUC-Opu-083343	Oryza punctata	82.96	2.00e-164	571.00
IUUC-Oru-084993	Oryza rufipogon	80.95	3.00e-166	577.00
IUUC-Osa-086061	Oryza sativa	80.10	3.00e-164	570.00
IUUC-Sit-109983	Setaria italica	91.10	0.00e+00	640.00
IUUC-Sbi-114183	Sorghum bicolor	94.04	0.00e+00	659.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence