iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d024523	Zm00001d024523_T040	Zm00001d024523_T040
Zm00001d024523	Zm00001d024523_T002	Zm00001d024523_T002
Zm00001d024523	Zm00001d024523_T051	Zm00001d024523_T051
Zm00001d024523	Zm00001d024523_T024	Zm00001d024523_T024
Zm00001d024523	Zm00001d024523_T011	Zm00001d024523_T011
Zm00001d024523	Zm00001d024523_T003	Zm00001d024523_T003
Zm00001d024523	Zm00001d024523_T055	Zm00001d024523_T055
Zm00001d024523	Zm00001d024523_T009	Zm00001d024523_T009
Zm00001d024523	Zm00001d024523_T013	Zm00001d024523_T013
Zm00001d024523	Zm00001d024523_T031	Zm00001d024523_T031
Zm00001d024523	Zm00001d024523_T022	Zm00001d024523_T022
Zm00001d024523	Zm00001d024523_T016	Zm00001d024523_T016
Zm00001d024523	Zm00001d024523_T060	Zm00001d024523_T060
Zm00001d024523	Zm00001d024523_T045	Zm00001d024523_T045
Zm00001d024523	Zm00001d024523_T038	Zm00001d024523_T038
Zm00001d024523	Zm00001d024523_T037	Zm00001d024523_T037
Zm00001d024523	Zm00001d024523_T019	Zm00001d024523_T019
Zm00001d024523	Zm00001d024523_T005	Zm00001d024523_T005
Zm00001d024523	Zm00001d024523_T033	Zm00001d024523_T033
Zm00001d024523	Zm00001d024523_T029	Zm00001d024523_T029
Zm00001d024523	Zm00001d024523_T010	Zm00001d024523_T010
Zm00001d024523	Zm00001d024523_T034	Zm00001d024523_T034
Zm00001d024523	Zm00001d024523_T049	Zm00001d024523_T049
Zm00001d024523	Zm00001d024523_T041	Zm00001d024523_T041
Zm00001d024523	Zm00001d024523_T023	Zm00001d024523_T023
Zm00001d024523

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.40e-17	64.3	451	486
UBD/Beta-Prp	1.70e-52	180.5	341	620

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tl.lvsGsdDgtikvWDlrtg 33
           H ++v+++af  ++ tl +++++dD+ ikvWD  tg
   Q: 451  HIGGVNDIAFshPNkTLsIITCGDDKLIKVWDAQTG 486
           9999*******97766679*************8877 PP

UBD/Beta-Prp

   S: 90   lkghedsvlslsfsp.sgdklvsGshdrtirvwdletgqclee............................................... 131
             ++ ++v+sl+f+p ++  l++G+++  i vw++ +++ + +                                               
   Q: 341  TLNQGSNVMSLDFHPvQQTILLVGTNVGDIAVWEVGSRERIAHktfkvwdigsctlplqaslmkdaavsvnrclwspdgtilgvafskhi 430
           4457789********88899*********************999********************************************** PP
   S: 132  .................tlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvysls..fdsngkelvsgsld 201
                            +++   gv+ ++ +hp++   ++++++D+ +++Wd +tg+  +t++g h+ +vys+   ++++ +++ s + d
   Q: 431  vqtytfvpngdlrqqaeIDAHIGGVNDIAFSHPNKtLSIITCGDDKLIKVWDAQTGQKQYTFEG-HEAPVYSVCphYKESIQFIFSTAID 519
           ***********************************999*************************9.********97666666********* PP
   S: 202  gtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgs....sDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlgseds 287
           g++k w +      + + +   + + ++ s +++rl s++     D  +  W+ + g + +t+++ ++++  v  ++ ++n +++++++ 
   Q: 520  GKIKAWLYDCLGSRVDYDAPGHWCTTMAYSADGTRLFSCGtskeGDSHLVEWNETEGAIKRTYNGFRKRSLGVVQFDTTRNRFLAAGDEF 609
           ******998444589999999*****************9988655666666****************999999888************** PP
   S: 288  kvniwklkkne 298
            v++w++++n+
   Q: 610  LVKFWDMDNNN 620
           *******9986 PP

Organism

Zea mays

Protein Sequence
(Fasta)

MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFYFNMKH FEDLVQGGEW DEVEKYLSGF 60
TKVEDNRYSM KIFFEIRKQK YLEALDRHDR AKAVEILVKD LKVFASFNEE LFKEITQLLT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACGGGTGAGG AGAAAACAGA GAGCGAGAGA AGTTCTCGGA GAGAGAAACT AAGCGAGCGA 60
GATAAAAGAA GCGAAACGCG GGCAGCTGTT GCTGAGGCGT GGAGACGGAG GCGGCGGCGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR006595--CTLH_C
IPR006594--LisH
IPR011047--Quinoprotein_ADH-like_supfam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50897--CTLH
PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00668--CTLH
SM00667--LisH
SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000215	Aegilops tauschii	90.56	0.00e+00	2126.00
IUUC-Atr-003021	Amborella trichopoda	78.90	0.00e+00	1566.00
IUUC-Bdi-014941	Brachypodium distachyon	89.78	0.00e+00	2090.00
IUUC-Lpe-051683	Leersia perrieri	91.17	0.00e+00	2122.00
IUUC-Mac-065511	Musa acuminata	84.26	0.00e+00	1954.00
IUUC-Oba-075179	Oryza barthii	90.74	0.00e+00	2125.00
IUUC-Obr-076730	Oryza brachyantha	91.25	0.00e+00	2126.00
IUUC-Ogl-076958	Oryza glaberrima	90.92	0.00e+00	2172.00
IUUC-Ogu-078424	Oryza glumaepatula	90.74	0.00e+00	2125.00
IUUC-Oin-079972	Oryza indica	91.00	0.00e+00	2134.00
IUUC-Olo-080979	Oryza longistaminata	91.52	0.00e+00	2130.00
IUUC-Ome-081212	Oryza meridionalis	91.34	0.00e+00	2120.00
IUUC-Oni-082820	Oryza nivara	90.74	0.00e+00	2125.00
IUUC-Opu-083223	Oryza punctata	88.84	0.00e+00	2053.00
IUUC-Oru-084418	Oryza rufipogon	89.50	0.00e+00	2120.00
IUUC-Osa-086275	Oryza sativa	91.00	0.00e+00	2134.00
IUUC-Ppa-095814	Physcomitrella patens	69.26	0.00e+00	1566.00
IUUC-Smo-109119	Selaginella moellendorffii	68.51	0.00e+00	1503.00
IUUC-Sit-110121	Setaria italica	96.37	0.00e+00	2225.00
IUUC-Sly-111268	Solanum lycopersicum	74.76	0.00e+00	1784.00
IUUC-Sbi-114032	Sorghum bicolor	97.25	0.00e+00	2234.00
IUUC-Tca-121774	Theobroma cacao	76.46	0.00e+00	1768.00
IUUC-Tae-125673	Triticum aestivum	90.56	0.00e+00	2126.00
IUUC-Tur-126718	Triticum urartu	89.26	0.00e+00	2090.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence