iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d027807	Zm00001d027807_T017	Zm00001d027807_T017
Zm00001d027807	Zm00001d027807_T002	Zm00001d027807_T002
Zm00001d027807	Zm00001d027807_T016	Zm00001d027807_T016
Zm00001d027807	Zm00001d027807_T008	Zm00001d027807_T008
Zm00001d027807	Zm00001d027807_T003	Zm00001d027807_T003
Zm00001d027807	Zm00001d027807_T007	Zm00001d027807_T007
Zm00001d027807	Zm00001d027807_T012	Zm00001d027807_T012
Zm00001d027807	Zm00001d027807_T001	Zm00001d027807_T001
Zm00001d027807	Zm00001d027807_T004	Zm00001d027807_T004
Zm00001d027807	Zm00001d027807_T005	Zm00001d027807_T005
Zm00001d027807	Zm00001d027807_T010	Zm00001d027807_T010

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	1.20e-24	89.2	1189	1506

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

DUB/USP

   S: 1    tGlkNlgN..tCYmNSvLQcLsnipelrelllekkkeklneenpkepkgellkslqklfeelw...kskkkavsprellkalkkeaee 83
           tGlkN      C++N ++Q+L++i+ +r+ +l+  +++l++     ++ + +++l  +f  l    k++ +av+p++l  al+k  ++
   Q: 1189 TGLKNAAGeyNCFLNVIIQSLWHIRRFRDEFLK--TSSLHKH---VEDPCAVCALYGIFIDLSkaaKGHGEAVAPTSLRIALSKSYPN 1271
           68999854237**********************..4444443...45667788888888888766689999************99776 PP
   S: 84   ...fsgyeqqDaqEflaflldqleeelkkeknkpkeeeeeedkselsdeaeekkkkknkslisdlFqgqlksqikclecdnvssreep 168
              f++ + +Da+E+l ++++ l+++ ++    ++ +     k + +++  + +    +++ + lF++ + +++ c +c+ +s r  +
   Q: 1272 skfFQEGQMNDASEVLGVIFECLHKSYTS---RTVCHG----KPHEKNSIGSWDCANISCIAHSLFGMDVYERMNCHNCKMESRRL-K 1351
           55688**********************33...222222....22333334555778889**********************99666.6 PP
   S: 169  fldlslpvpgkeetkke......slqdcLesftkeeelegenkyycekckkkqeaekklklkklPevLilhLkRfsfseeqksrekin 250
            +++  +++ ++ +  +      s++++L+    +++l +++      c k       + l++ P+v+++ L +   +++++++    
   Q: 1352 YTSFFHNINASSLRTAKmmcpdsSFDELLKVVIMNDQLACDQ--DVGGCGKPN--HIHHILSTPPHVFTVVLGWQ--NNKENVDDISA 1433
           78888999988877666888888999***9999999999987..555665444..456889**************..88889999999 PP
   S: 251  kkvefpleLdlspfctspeekqkekkkYeLiavvvHsGslssGHYvayvknekgkWllfdDskVtev.keeevleetg...s 328
           +   +  e+d+s f    ++      k  L++vv+++G     HY++++ + +g+W+ +dD++V++v ++ +vl +++    
   Q: 1434 TLAGISTEIDISIFYRGLDQ----GSKHTLVSVVCYYG----QHYHCFAFK-DGRWVMYDDQTVKVVgSWGDVLVMCEkghL 1506
           99999999****98888443....6799**********....9********.9*************9667887776655554 PP

Organism

Zea mays

Protein Sequence
(Fasta)

MGRKKRTSAP NPTPPPLDAS RRSPAAAEKP AGIGREDAAV RAEVDKALAC LQRGSHARAQ 60
RLTRDAIARH GEASPLLLRA HGTVHARAAS VLDDHASRAR HQRTALQAAQ RAVQLAPDSI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACTCCAGTCC GGCTGGCTGC GCGTCTTGTT TTATGGGGTA TCCGCGCGGC GCTCCGGTTC 60
GCCCCCAAAT CTCATTCCCA TGGGCCGGAA GAAGCGAACC TCCGCACCAA ACCCTACTCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0378--Hydrolase
KW-1185--Reference proteome

Interpro

IPR006866--DUF627_N
IPR006865--DUF629
IPR001394--Peptidase_C19_UCH
IPR011990--TPR-like_helical_dom
IPR028889--USP_dom
IPR013087--Znf_C2H2_type

PROSITE

PS50235--USP_3
PS00028--ZINC_FINGER_C2H2_1

Pfam

PF04781--DUF627
PF04780--DUF629
PF00443--UCH

Gene Ontology

GO:0046872--F:metal ion binding
GO:0036459--F:thiol-dependent ubiquitinyl hydrolase activity
GO:0016579--P:protein deubiquitination

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002451	Amborella trichopoda	41.88	0.00e+00	664.00
IUUC-Aly-005468	Arabidopsis lyrata	38.87	1.00e-172	600.00
IUUC-Ath-006682	Arabidopsis thaliana	38.16	4.00e-175	608.00
IUUC-Bdi-015058	Brachypodium distachyon	63.41	0.00e+00	1727.00
IUUC-Bol-015670	Brassica oleracea	56.13	1.00e-134	473.00
IUUC-Bra-016731	Brassica rapa	40.54	0.00e+00	1075.00
IUUC-Dme-032071	Drosophila melanogaster	31.71	1.00e-38	155.00
IUUC-Gma-043273	Glycine max	38.54	6.00e-180	625.00
IUUC-Mtr-058682	Medicago truncatula	42.37	0.00e+00	1062.00
IUUC-Mpu-066404	Mustela putorius furo	32.55	9.00e-41	162.00
IUUC-Opr-070676	Ochotona princeps	29.38	2.00e-18	88.60
IUUC-Oba-075174	Oryza barthii	59.14	0.00e+00	1529.00
IUUC-Ogl-077138	Oryza glaberrima	59.39	0.00e+00	989.00
IUUC-Oin-079125	Oryza indica	59.39	0.00e+00	991.00
IUUC-Olo-080872	Oryza longistaminata	55.49	0.00e+00	787.00
IUUC-Ome-081864	Oryza meridionalis	59.35	0.00e+00	991.00
IUUC-Osa-085583	Oryza sativa	78.25	0.00e+00	685.00
IUUC-Ppa-095930	Physcomitrella patens	32.75	5.00e-128	452.00
IUUC-Pop-099539	Populus trichocarpa	39.62	0.00e+00	642.00
IUUC-Ppe-101918	Prunus persica	40.58	0.00e+00	657.00
IUUC-Sit-110021	Setaria italica	75.30	0.00e+00	1146.00
IUUC-Sly-111258	Solanum lycopersicum	42.55	0.00e+00	1180.00
IUUC-Stu-112904	Solanum tuberosum	42.69	0.00e+00	1142.00
IUUC-Sbi-114345	Sorghum bicolor	84.29	0.00e+00	2508.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence