iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d028177	Zm00001d028177_T014	Zm00001d028177_T014
Zm00001d028177	Zm00001d028177_T005	Zm00001d028177_T005
Zm00001d028177	Zm00001d028177_T018	Zm00001d028177_T018
Zm00001d028177	Zm00001d028177_T006	Zm00001d028177_T006
Zm00001d028177	Zm00001d028177_T020	Zm00001d028177_T020
Zm00001d028177	Zm00001d028177_T001	Zm00001d028177_T001
Zm00001d028177	Zm00001d028177_T012	Zm00001d028177_T012
Zm00001d028177	Zm00001d028177_T013	Zm00001d028177_T013

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	8.50e-70	237.6	108	444

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

DUB/USP

   S: 2    GlkNlgNtCYmNSvLQcLsnipelrelllekkkeklneenpkepkgellkslqklfeelwkskkkavsprellkalkkeaeefsgyeqqD 91
           Gl+Nlg+tCY NS+LQcL++ +++r+ +++ +   l       +k ++l++l +lf++l++sk   ++ + ++kal+      ++  qqD
   Q: 108  GLTNLGATCYANSILQCLYMNTSFRSGIFSLDLDVL-------KKHPVLDQLVRLFAQLQSSKMAFIDSTPFIKALEL-----DNGVQQD 185
           9*****************************444444.......4579*****************************95.....5567*** PP
   S: 92   aqEflaflldqleeelkkeknkpkeeeeeedkselsdeaeekkkkknkslisdlFqgqlksqikclecdnvs...sreepfldlslpvpg 178
           ++Efl+ +l+ le++l                       + +k   +++++++lF+g++++ ++c +c++ s   s+ e+f++l+l+++g
   Q: 186  SHEFLTLFLSLLEQSL-----------------------SHSKVPGTREIVQHLFRGSVSHVTRCSSCGKDSaasSKSEDFYELELNIKG 252
           ****************.......................45788999**********************98877799************* PP
   S: 179  keetkkeslqdcLesftkeeelegenkyycekckkkqeaekklklkklPevLilhLkRfsfseeqksrekinkkvefpleLdlspfctsp 268
            +     +l+++L+++++ee l gen+y+ce+c+k+++a++ +kl++lP+v  ++LkR+ f  ++  ++ki+++++fp +Ld+ + +++p
   Q: 253  FN-----NLEESLDDYFSEEGLVGENQYFCESCQKRVDATRCIKLRSLPPVVNFQLKRYVFLPKTTTKKKISSSFSFPGQLDMGKRLSNP 337
           **.....9*********************************************************************************8 PP
   S: 269  eekqkekkkYeLiavvvHsG.slssGHYvayvknekgk.WllfdDskVtevkeeevleetg............................. 327
           ++    +++YeL a+++H+G  ++sGHYva++k+e+++ W++fdD++V+++  + + e+ g                             
   Q: 338  TS----SYTYELAAILIHKGtAANSGHYVAHIKDESNGqWWEFDDETVSKLGLHPFGENLGktsnkddrkpqgisiegsvtnnnnghqea 423
           86....69**************************65555***********9888777766677889999999999999999999999999 PP
   S: 328  ............staYvlfYk 336
                       ++aY+l+Yk
   Q: 424  asssspgemfssTDAYMLMYK 444
           999999999999999999997 PP

Organism

Zea mays

Protein Sequence
(Fasta)

MSRPNTRNKN KRPRADESNS PSVAVFKKIH STGDISKSDI CQLYMVWKPL CHGCHGNSKD 60
SPNCFCGLIP IGNGVRKSGL WQKTQEIIRG LGPNPSSDLR DSSETPAGLT NLGATCYANS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCAACCGAGC ACCCAAACCC TAACTGAAGT TATTTGGCTA TTTGTATTTG GATGCGATGT 60
AATGTTAAGT GTAGCATACA CATGTAATCT TCCTGCAACC GAGCACCCAA ACCCTAACTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0378--Hydrolase
KW-1185--Reference proteome

Interpro

IPR006615--Pept_C19_DUSP
IPR001394--Peptidase_C19_UCH
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR033841--USP48
IPR018200--USP_CS
IPR028889--USP_dom

PROSITE

PS51283--DUSP
PS50053--UBIQUITIN_2
PS00972--USP_1
PS00973--USP_2
PS50235--USP_3

Pfam

PF00443--UCH

SMART

SM00695--DUSP

Gene Ontology

GO:0004843--F:thiol-dependent ubiquitin-specific protease activity
GO:0016579--P:protein deubiquitination
GO:0006511--P:ubiquitin-dependent protein catabolic process

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002976	Amborella trichopoda	55.90	0.00e+00	1154.00
IUUC-Afl-008381	Aspergillus flavus	32.23	2.00e-36	149.00
IUUC-Bol-016289	Brassica oleracea	54.48	0.00e+00	1131.00
IUUC-Cel-018662	Caenorhabditis elegans	31.37	2.00e-31	131.00
IUUC-Cre-022636	Chlamydomonas reinhardtii	39.01	1.00e-68	255.00
IUUC-Cin-025307	Ciona intestinalis	35.55	2.00e-44	172.00
IUUC-Cne-027065	Cryptococcus neoformans	27.99	2.00e-60	227.00
IUUC-Dme-032102	Drosophila melanogaster	29.12	8.00e-34	140.00
IUUC-Gma-043910	Glycine max	56.96	0.00e+00	1167.00
IUUC-Mga-059896	Meleagris gallopavo	27.63	4.00e-93	335.00
IUUC-Mvi-060269	Microbotryum violaceum	38.58	9.00e-59	222.00
IUUC-Ogl-077339	Oryza glaberrima	87.50	7.00e-153	532.00
IUUC-Osa-086221	Oryza sativa	87.50	7.00e-153	532.00
IUUC-Pop-099738	Populus trichocarpa	56.66	0.00e+00	1161.00
IUUC-Smo-109579	Selaginella moellendorffii	45.61	0.00e+00	824.00
IUUC-Sly-111377	Solanum lycopersicum	56.78	0.00e+00	1135.00
IUUC-Tru-117651	Takifugu rubripes	27.30	1.00e-95	344.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence