iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d028481	Zm00001d028481_T002	Zm00001d028481_T002
Zm00001d028481	Zm00001d028481_T025	Zm00001d028481_T025
Zm00001d028481	Zm00001d028481_T007	Zm00001d028481_T007
Zm00001d028481	Zm00001d028481_T017	Zm00001d028481_T017
Zm00001d028481	Zm00001d028481_T032	Zm00001d028481_T032
Zm00001d028481	Zm00001d028481_T001	Zm00001d028481_T001

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	8.70e-20	72.0	456	491
UBD/Beta-Prp	3.90e-49	169.5	415	675

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tl.lvsGsdDgtikvWDlrtg 33
           H ++v+++af  ++  l +++++dD+tikvW+ ++g
   Q: 456  HVGGVNDIAFahPNkQLcIITCGDDKTIKVWEATSG 491
           99*********97653359************98876 PP

UBD/Beta-Prp

   S: 13   itcvkfspdksllatgsrdgtikvwdvttgkllrsl...sgheaevtavkfspdgk..ilvtgseDrtikvwdlstgkcvhtlkghedsv 97
           ++ + +spd++l+ +++ ++ ++++++  g+ +r+      h ++v+++ f +  k   ++t+++D+tikvw+  +g    t++ghe+ v
   Q: 415  VNRIIWSPDGTLFGVAYSRHIVQIYSYNGGDDIRQHleiDAHVGGVNDIAFAHPNKqlCIITCGDDKTIKVWEATSGAKQFTFEGHEAPV 504
           566788************************99665323389**********99888899******************************* PP
   S: 98   lslsfsp..sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsG..slDrtvrl..Wdlktgkllrtltgghtd 181
           +s+  +   + +++ s+  d  i+ w  ++     + +++  ++ ++++++ dg+ l+s+  s+D+   l  W+ + g + rt +g  ++
   Q: 505  YSVCPHYkeNIQFIFSTALDGKIKAWLYDNLGSRVDYDAP-GHWCTTMAYSADGSRLFSCgtSKDGESHLveWNESEGAVKRTYQGFRKR 593
           **855544388***************99998777756555.569999999**9*999998334566544333999*************** PP
   S: 182  svyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnght..dnvksvrfspnderlvsgssDgsiriW.dlrsgdllktl 260
           s   ++fd ++++++++++   +k+wd+ ++  + t  +    +   ++rf +++++l++ ++D+ i+i  + +   ll+tl
   Q: 594  SMGVVQFDTTRNRFLAAGDEFMIKIWDMDSTGLLTTIDADGglTASPRIRFNKEGTLLAVSTADNGIKILaNADGLRLLRTL 675
           *****************************88889998887733445569999****************95455555555555 PP

Organism

Zea mays

Protein Sequence
(Fasta)

MTSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFYFNIKY FEDEVLNGNW DEVERYLGGF 60
TKVDDNRYSM KIFFEIRKQK YLEALDKHDR SKAVEILVKD LKVFASFNEE LFKEITQLLT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCAGGCC TGGACCTGCG CTAGACCTCG AAGCCTCGAT CGCACCGCAT CTTCTCTCTC 60
TGCTGCTGGT CCGCTCCGTC GCCGCCGACC CCGCCGCCAG CTTCCCCTTC CACCTAAAAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR006595--CTLH_C
IPR006594--LisH
IPR027728--Topless_fam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50897--CTLH
PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00668--CTLH
SM00667--LisH
SM00320--WD40

Gene Ontology

GO:0006355--P:regulation of transcription, DNA-templated

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000565	Aegilops tauschii	89.22	0.00e+00	2063.00
IUUC-Atr-002737	Amborella trichopoda	77.37	0.00e+00	1727.00
IUUC-Bdi-014914	Brachypodium distachyon	89.16	0.00e+00	2027.00
IUUC-Hvu-047688	Hordeum vulgare	90.01	0.00e+00	1947.00
IUUC-Smo-109617	Selaginella moellendorffii	68.27	0.00e+00	1494.00
IUUC-Tae-125600	Triticum aestivum	89.96	0.00e+00	2065.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence