iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d032598	Zm00001d032598_T003	Zm00001d032598_T003
Zm00001d032598	Zm00001d032598_T014	Zm00001d032598_T014
Zm00001d032598	Zm00001d032598_T013	Zm00001d032598_T013
Zm00001d032598	Zm00001d032598_T026	Zm00001d032598_T026
Zm00001d032598	Zm00001d032598_T023	Zm00001d032598_T023
Zm00001d032598	Zm00001d032598_T004	Zm00001d032598_T004
Zm00001d032598	Zm00001d032598_T024	Zm00001d032598_T024
Zm00001d032598	Zm00001d032598_T020	Zm00001d032598_T020
Zm00001d032598	Zm00001d032598_T001	Zm00001d032598_T001

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.60e-30	105.1	192	229
UBD/Beta-Prp	3.80e-49	169.5	65	306

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
           gHt +++ l+f +d + +vsG+ D++++vWDl+ g+l 
   Q: 192  GHTQRINVLKFtPDgRWIVSGGADNSVMVWDLTAGKLM 229
           8***********9999******************9986 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkgheds 96
           +h+  ++c kf  + +++l+tg++d ++ +w + ++ +l slsg +++v +v+f++++ ++  g+  +tik+w+++  k v+t++gh +s
   Q: 65   AHTLNVNCAKFgRRASRILITGGEDLKVNLWAIGKPGALLSLSGFTSPVESVSFDSSEVTIGAGAASGTIKIWNIEEAKVVRTFTGHRSS 154
           799999******9*********************************************999999999*********************** PP
   S: 97   vlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvysl 186
             sl+f+p g++l++Gs+d   ++wd++++ c++ t +gh++ +n++++ pdg+ +vsG++D+ v++Wdl  gkl++++   h+++v++l
   Q: 155  CASLDFHPFGEFLATGSSDTNMKIWDTRKKRCIH-TYKGHTQRINVLKFTPDGRWIVSGGADNSVMVWDLTAGKLMHDFCL-HEGPVNCL 242
           **********************************.********************************************98.******** PP
   S: 187  sfdsngkelvsgsldgtvklwdlqtgec........vrtlnghtdnvksvrfspnderlvsgss 242
           ++++  + l++gs d+tvk+wdl+t e          r++ +  + ++s++f ++++ + +g +
   Q: 243  DVHPYEFLLATGSVDKTVKFWDLETFELigssgpenNREYFELASAIRSMKFNSDGKTIFCGLH 306
           ************************55554555555589999999************99999854 PP

Organism

Zea mays

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MTAAIADGHY ARLQASYPVN CWFGDFEFEL EVGLLLTALF ELVVCFIENV AAGIMDSAAA 60
EEFVAHTLNV NCAKFGRRAS RILITGGEDL KVNLWAIGKP GALLSLSGFT SPVESVSFDS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGACAGCGG CCATTGCCGA TGGCCACTAC GCGCGCCTAC AAGCTTCGTA TCCCGTGAAT 60
TGCTGGTTTG GGGATTTTGA ATTTGAACTT GAAGTCGGAT TGCTCTTGAC TGCTTTGTTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000873	Aegilops tauschii	50.17	0.00e+00	744.00
IUUC-Bdi-014552	Brachypodium distachyon	59.56	0.00e+00	963.00
IUUC-Hvu-047781	Hordeum vulgare	56.27	0.00e+00	894.00
IUUC-Lpe-051597	Leersia perrieri	68.33	0.00e+00	647.00
IUUC-Oba-075845	Oryza barthii	61.81	0.00e+00	1014.00
IUUC-Obr-076798	Oryza brachyantha	62.24	0.00e+00	1065.00
IUUC-Ogu-079022	Oryza glumaepatula	63.97	0.00e+00	1061.00
IUUC-Oin-080135	Oryza indica	63.97	0.00e+00	1061.00
IUUC-Olo-080665	Oryza longistaminata	62.03	0.00e+00	905.00
IUUC-Ome-081884	Oryza meridionalis	63.82	0.00e+00	1056.00
IUUC-Oni-082726	Oryza nivara	62.01	0.00e+00	1010.00
IUUC-Opu-083637	Oryza punctata	63.51	0.00e+00	1071.00
IUUC-Oru-085123	Oryza rufipogon	63.86	0.00e+00	1058.00
IUUC-Osa-086267	Oryza sativa	63.86	0.00e+00	1058.00
IUUC-Sit-109837	Setaria italica	73.50	0.00e+00	1256.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence